Gene annotation
Transcriptome id Sobic.004G349400.1
Synonym Sb04g037610
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XVZ1
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G41350 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g18947.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022640 , Zm00025a003771
Brachypodium -
Barley -
Wheat TraesCS6D02G383800 , TraesCS6B02G439800 , TraesCS6A02G399600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001500 AML1, putative, expressed -
2 Sobic.004G355000 SAC9, putative, expressed -
3 Sobic.003G322700 expressed protein -
4 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
5 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
6 Sobic.004G053700 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
7 Sobic.002G009700 AMP-binding domain containing protein, expressed -
8 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
9 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
10 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
12 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
13 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
14 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
15 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
16 Sobic.003G069500 regulator of ribonuclease, putative, expressed -
17 Sobic.006G030600 xa21, putative, expressed -
18 Sobic.001G507300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
20 Sobic.006G138400 regulatory subunit, putative, expressed -


Gene co-expression network
sample Sobic004G349400 Sobic004G349400 Sobic010G001500 Sobic010G001500 Sobic004G349400--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic004G349400--Sobic004G355000 Sobic003G322700 Sobic003G322700 Sobic004G349400--Sobic003G322700 Sobic001G290000 Sobic001G290000 Sobic004G349400--Sobic001G290000 Sobic003G407300 Sobic003G407300 Sobic004G349400--Sobic003G407300 Sobic004G053700 Sobic004G053700 Sobic004G349400--Sobic004G053700 Sobic002G009700 Sobic002G009700 Sobic004G349400--Sobic002G009700 Sobic004G052900 Sobic004G052900 Sobic004G349400--Sobic004G052900 Sobic006G214500 Sobic006G214500 Sobic004G349400--Sobic006G214500 Sobic010G001500--Sobic003G322700 Sobic007G024700 Sobic007G024700 Sobic010G001500--Sobic007G024700 Sobic010G001500--Sobic004G355000 Sobic006G204900 Sobic006G204900 Sobic010G001500--Sobic006G204900 Sobic010G224000 Sobic010G224000 Sobic010G001500--Sobic010G224000 Sobic002G419800 Sobic002G419800 Sobic010G001500--Sobic002G419800 Sobic001G207400 Sobic001G207400 Sobic010G001500--Sobic001G207400 Sobic001G178700 Sobic001G178700 Sobic010G001500--Sobic001G178700 Sobic001G146800 Sobic001G146800 Sobic010G001500--Sobic001G146800 Sobic004G355000--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic004G355000--Sobic003G322700 Sobic004G113400 Sobic004G113400 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic002G266000 Sobic002G266000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic003G322700--Sobic010G001500 Sobic003G322700--Sobic004G355000 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic001G224600 Sobic001G224600 Sobic001G290000--Sobic001G224600 Sobic001G290000--Sobic007G024700 Sobic002G132000 Sobic002G132000 Sobic001G290000--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic001G290000--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic001G290000--Sobic008G191100 Sobic004G264400 Sobic004G264400 Sobic001G290000--Sobic004G264400 Sobic001G290000--Sobic002G419800 Sobic001G137100 Sobic001G137100 Sobic001G290000--Sobic001G137100 Sobic009G249200 Sobic009G249200 Sobic001G290000--Sobic009G249200 Sobic009G121100 Sobic009G121100 Sobic003G407300--Sobic009G121100 Sobic001G373200 Sobic001G373200 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic003G407300--Sobic007G024700 Sobic004G053700--Sobic006G087700 Sobic002G230100 Sobic002G230100 Sobic004G053700--Sobic002G230100 Sobic004G053700--Sobic003G322700 Sobic004G042300 Sobic004G042300 Sobic004G053700--Sobic004G042300 Sobic007G075400 Sobic007G075400 Sobic004G053700--Sobic007G075400 Sobic010G169000 Sobic010G169000 Sobic004G053700--Sobic010G169000 Sobic003G320700 Sobic003G320700 Sobic004G053700--Sobic003G320700 Sobic004G331100 Sobic004G331100 Sobic004G053700--Sobic004G331100 Sobic004G053700--Sobic002G009700 Sobic002G009700--Sobic003G355600 Sobic009G126900 Sobic009G126900 Sobic002G009700--Sobic009G126900 Sobic010G043400 Sobic010G043400 Sobic002G009700--Sobic010G043400 Sobic008G062200 Sobic008G062200 Sobic002G009700--Sobic008G062200 Sobic002G009700--Sobic003G322700 Sobic003G329400 Sobic003G329400 Sobic002G009700--Sobic003G329400 Sobic002G009700--Sobic006G204900 Sobic009G193700 Sobic009G193700 Sobic002G009700--Sobic009G193700 Sobic002G009700--Sobic007G024700 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic003G100800 Sobic003G100800 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic004G052900--Sobic001G248300 Sobic009G094300 Sobic009G094300 Sobic004G052900--Sobic009G094300 Sobic006G214500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic006G214500--Sobic009G249200
Octagon: transcription factors


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