Gene annotation
| Transcriptome id | Sobic.003G408400.1 |
|---|---|
| Synonym | Sb03g044320, ATTCP20, AT-TCP20, TCP20, PCF1, TCP-like gene;SbTCP10;SbTCP10 |
| Functional annotation | PCF-like (ClassI) Subclade 3 TCP (PubMedID : 21444336) "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941) "plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054) TCP family transcription factor, putative, expressed |
| UniProt | C5XGD6 |
| Pfam | PF03634 |
| Panther DB | PTHR31072 PTHR31072:SF4 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G27010 : TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g69980.1 : TCP family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022039 , Zm00025a039269 , Zm00025a026225 , Zm00025a033195 |
| Brachypodium | KQK11288 , PNT73507 |
| Barley | HORVU3Hr1G095400.3 , HORVU3Hr1G095400.2 , HORVU3Hr1G095400.1 , HORVU3Hr1G095400.6 , HORVU3Hr1G095400.5 , HORVU3Hr1G095400.4 , HORVU4Hr1G019380.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G308700 | BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed | K14508: regulatory protein NPR1 |
| 2 | Sobic.009G213400 | mitochondrial carrier protein, putative, expressed | K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 |
| 3 | Sobic.004G096300 | protein phosphatase 2C, putative, expressed | - |
| 4 | Sobic.001G053900 | nodulin, putative, expressed | - |
| 5 | Sobic.006G053700 | ACT domain containing protein, expressed | - |
| 6 | Sobic.010G280100 | expressed protein | - |
| 7 | Sobic.010G245100 | lectin-like receptor kinase 1, putative, expressed | - |
| 8 | Sobic.006G172900 | scarecrow, putative, expressed | - |
| 9 | Sobic.010G184600 | Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed | K00510: heme oxygenase 1 |
| 10 | Sobic.001G351400 | Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed | - |
| 11 | Sobic.010G052500 | ZOS6-01 - C2H2 zinc finger protein, expressed | - |
| 12 | Sobic.005G008001 | - | - |
| 13 | Sobic.001G377000 | auxin-repressed protein, putative, expressed | - |
| 14 | Sobic.001G387600 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 15 | Sobic.001G427500 | B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed | - |
| 16 | Sobic.007G148200 | auxin-repressed protein, putative, expressed | - |
| 17 | Sobic.009G094800 | sugar porter, putative, expressed | - |
| 18 | Sobic.003G314500 | expressed protein | - |
| 19 | Sobic.001G293800 | chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed | K01177: beta-amylase |
| 20 | Sobic.003G264901 | - | - |
Gene co-expression network
Octagon: transcription factors
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