Gene annotation
Transcriptome id Sobic.006G172900.1
Synonym ATHAM3, Sb06g024820, HAM3
Functional annotation scarecrow, putative, expressed
UniProt C5YDJ7
Pfam PF03514
Panther DB PTHR31636:SF64 PTHR31636
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os02g44370.1 : scarecrow, putative, expressed
MaizeGDB (Corn) Zm00025a056845 , Zm00025a010287 , Zm00025a011318 , Zm00025a001859 , Zm00025a032229 , Zm00025a038031
Brachypodium PNT69189
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G172900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G152101 - K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
3 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
4 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
5 Sobic.001G053900 nodulin, putative, expressed -
6 Sobic.008G152200 DC1 domain-containing protein, putative, expressed -
7 Sobic.008G175800 methyl-CpG binding domain containing protein, putative, expressed -
8 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
9 Sobic.006G043901 - -
10 Sobic.006G171700 - -
11 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
12 Sobic.010G280100 expressed protein -
13 Sobic.001G353250 - -
14 Sobic.008G042500 expressed protein -
15 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
16 Sobic.003G408400 PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
17 Sobic.005G036700 expressed protein -
18 Sobic.001G102300 homeobox domain containing protein, expressed -
19 Sobic.001G261496 - -
20 Sobic.007G207500 expressed protein -


Gene co-expression network
sample Sobic006G172900 Sobic006G172900 Sobic007G152101 Sobic007G152101 Sobic006G172900--Sobic007G152101 Sobic004G113800 Sobic004G113800 Sobic006G172900--Sobic004G113800 Sobic003G308700 Sobic003G308700 Sobic006G172900--Sobic003G308700 Sobic010G214000 Sobic010G214000 Sobic006G172900--Sobic010G214000 Sobic001G053900 Sobic001G053900 Sobic006G172900--Sobic001G053900 Sobic008G152200 Sobic008G152200 Sobic006G172900--Sobic008G152200 Sobic008G175800 Sobic008G175800 Sobic006G172900--Sobic008G175800 Sobic009G232700 Sobic009G232700 Sobic006G172900--Sobic009G232700 Sobic006G043901 Sobic006G043901 Sobic006G172900--Sobic006G043901 Sobic007G152101--Sobic006G172900 Sobic007G152101--Sobic009G232700 Sobic003G361500 Sobic003G361500 Sobic007G152101--Sobic003G361500 Sobic006G109300 Sobic006G109300 Sobic007G152101--Sobic006G109300 Sobic008G042500 Sobic008G042500 Sobic007G152101--Sobic008G042500 Sobic001G298600 Sobic001G298600 Sobic007G152101--Sobic001G298600 Sobic001G131800 Sobic001G131800 Sobic007G152101--Sobic001G131800 Sobic002G187801 Sobic002G187801 Sobic007G152101--Sobic002G187801 Sobic007G152101--Sobic003G308700 Sobic010G056200 Sobic010G056200 Sobic004G113800--Sobic010G056200 Sobic007G052900 Sobic007G052900 Sobic004G113800--Sobic007G052900 Sobic009G140500 Sobic009G140500 Sobic004G113800--Sobic009G140500 Sobic001G368400 Sobic001G368400 Sobic004G113800--Sobic001G368400 Sobic001G118100 Sobic001G118100 Sobic004G113800--Sobic001G118100 Sobic009G034200 Sobic009G034200 Sobic004G113800--Sobic009G034200 Sobic004G241500 Sobic004G241500 Sobic004G113800--Sobic004G241500 Sobic004G174400 Sobic004G174400 Sobic004G113800--Sobic004G174400 Sobic003G324000 Sobic003G324000 Sobic004G113800--Sobic003G324000 Sobic002G073900 Sobic002G073900 Sobic003G308700--Sobic002G073900 Sobic007G054100 Sobic007G054100 Sobic003G308700--Sobic007G054100 Sobic002G174900 Sobic002G174900 Sobic003G308700--Sobic002G174900 Sobic002G273700 Sobic002G273700 Sobic003G308700--Sobic002G273700 Sobic003G308700--Sobic006G172900 Sobic009G094800 Sobic009G094800 Sobic003G308700--Sobic009G094800 Sobic001G387600 Sobic001G387600 Sobic003G308700--Sobic001G387600 Sobic009G008100 Sobic009G008100 Sobic003G308700--Sobic009G008100 Sobic003G308700--Sobic002G187801 Sobic003G108600 Sobic003G108600 Sobic010G214000--Sobic003G108600 Sobic009G189000 Sobic009G189000 Sobic010G214000--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic010G214000--Sobic001G102300 Sobic006G135100 Sobic006G135100 Sobic010G214000--Sobic006G135100 Sobic010G214000--Sobic001G053900 Sobic003G068800 Sobic003G068800 Sobic010G214000--Sobic003G068800 Sobic006G258700 Sobic006G258700 Sobic010G214000--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G214000--Sobic001G351400 Sobic003G292600 Sobic003G292600 Sobic010G214000--Sobic003G292600 Sobic004G096300 Sobic004G096300 Sobic001G053900--Sobic004G096300 Sobic002G376700 Sobic002G376700 Sobic001G053900--Sobic002G376700 Sobic001G053900--Sobic010G214000 Sobic001G291200 Sobic001G291200 Sobic001G053900--Sobic001G291200 Sobic003G264901 Sobic003G264901 Sobic001G053900--Sobic003G264901 Sobic001G053900--Sobic004G113800 Sobic001G053900--Sobic006G172900 Sobic001G053900--Sobic008G152200 Sobic007G071000 Sobic007G071000 Sobic001G053900--Sobic007G071000 Sobic008G152200--Sobic007G071000 Sobic008G152200--Sobic004G096300 Sobic004G096100 Sobic004G096100 Sobic008G152200--Sobic004G096100 Sobic007G014600 Sobic007G014600 Sobic008G152200--Sobic007G014600 Sobic009G205600 Sobic009G205600 Sobic008G152200--Sobic009G205600 Sobic001G377000 Sobic001G377000 Sobic008G152200--Sobic001G377000 Sobic009G023401 Sobic009G023401 Sobic008G152200--Sobic009G023401 Sobic008G152200--Sobic003G264901 Sobic007G179750 Sobic007G179750 Sobic008G152200--Sobic007G179750 Sobic008G175800--Sobic009G232700 Sobic001G394400 Sobic001G394400 Sobic008G175800--Sobic001G394400 Sobic003G298100 Sobic003G298100 Sobic008G175800--Sobic003G298100 Sobic006G273200 Sobic006G273200 Sobic008G175800--Sobic006G273200 Sobic002G157000 Sobic002G157000 Sobic008G175800--Sobic002G157000 Sobic009G087800 Sobic009G087800 Sobic008G175800--Sobic009G087800 Sobic007G205800 Sobic007G205800 Sobic008G175800--Sobic007G205800 Sobic001G504000 Sobic001G504000 Sobic008G175800--Sobic001G504000 Sobic002G248400 Sobic002G248400 Sobic008G175800--Sobic002G248400 Sobic001G107500 Sobic001G107500 Sobic009G232700--Sobic001G107500 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic009G232700--Sobic008G175800 Sobic009G232700--Sobic007G205800 Sobic009G232700--Sobic001G368400 Sobic009G232700--Sobic001G131800 Sobic009G232700--Sobic003G324000 Sobic009G232700--Sobic010G056200 Sobic006G043901--Sobic006G172900 Sobic006G043901--Sobic009G189000 Sobic006G043901--Sobic003G108600 Sobic006G043901--Sobic008G152200 Sobic001G002100 Sobic001G002100 Sobic006G043901--Sobic001G002100 Sobic006G043901--Sobic001G102300 Sobic006G043901--Sobic004G096300 Sobic001G261541 Sobic001G261541 Sobic006G043901--Sobic001G261541 Sobic006G043901--Sobic009G094800
Octagon: transcription factors


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