Gene annotation
Transcriptome id Sobic.006G171700.1
Synonym TGD1, Sb06g024700
Functional annotation -
UniProt C5YDI5
Pfam PF02405
Panther DB PTHR30188 PTHR30188:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006810; transport


Orthologs (automatic annotation)
TAIR AT1G19800 : trigalactosyldiacylglycerol 1
RAP-DB (Rice) LOC_Os04g46700.2 : ABC family transporter: toluene tolerance, putative, expressed
MaizeGDB (Corn) Zm00025a010297
Brachypodium KQJ83957 , KQJ83956
Barley HORVU2Hr1G097420.8 , HORVU2Hr1G097420.9 , HORVU2Hr1G097420.6 , HORVU2Hr1G097420.7 , HORVU2Hr1G097420.4 , HORVU2Hr1G097420.5 , HORVU2Hr1G097420.2 , HORVU2Hr1G097420.3 , HORVU2Hr1G097420.1 , HORVU2Hr1G097420.14 , HORVU2Hr1G097420.15 , HORVU2Hr1G097420.16 , HORVU2Hr1G097420.10 , HORVU2Hr1G097420.11 , HORVU2Hr1G097420.12 , HORVU2Hr1G097420.13
Wheat TraesCS2A02G413000 , TraesCS2B02G431200
Populus -


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cDNA sequences
Sobic.006G171700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
2 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
3 Sobic.002G122600 ankyrin repeat domain containing protein, expressed -
4 Sobic.008G165700 expressed protein -
5 Sobic.010G280100 expressed protein -
6 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
7 Sobic.009G017400 "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018(PubMedID : 31659915)@dual specificity protein phosphatase, putative, expressed -
8 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
9 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase
10 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
11 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
12 Sobic.006G172900 scarecrow, putative, expressed -
13 Sobic.003G000150 - -
14 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.001G004700 expressed protein -
16 Sobic.006G119800 leucine rich repeat containing protein, expressed -
17 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
18 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
19 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
20 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -


Gene co-expression network
sample Sobic006G171700 Sobic006G171700 Sobic004G227300 Sobic004G227300 Sobic006G171700--Sobic004G227300 Sobic003G123000 Sobic003G123000 Sobic006G171700--Sobic003G123000 Sobic002G122600 Sobic002G122600 Sobic006G171700--Sobic002G122600 Sobic008G165700 Sobic008G165700 Sobic006G171700--Sobic008G165700 Sobic010G280100 Sobic010G280100 Sobic006G171700--Sobic010G280100 Sobic001G429300 Sobic001G429300 Sobic006G171700--Sobic001G429300 Sobic009G017400 Sobic009G017400 Sobic006G171700--Sobic009G017400 Sobic010G268300 Sobic010G268300 Sobic006G171700--Sobic010G268300 Sobic002G174900 Sobic002G174900 Sobic006G171700--Sobic002G174900 Sobic001G427500 Sobic001G427500 Sobic004G227300--Sobic001G427500 Sobic001G261597 Sobic001G261597 Sobic004G227300--Sobic001G261597 Sobic004G227300--Sobic006G171700 Sobic003G359900 Sobic003G359900 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G214100 Sobic004G214100 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic003G122500 Sobic003G122500 Sobic003G123000--Sobic003G122500 Sobic004G095300 Sobic004G095300 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic010G171100 Sobic010G171100 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic001G281600 Sobic001G281600 Sobic002G122600--Sobic001G281600 Sobic009G215800 Sobic009G215800 Sobic002G122600--Sobic009G215800 Sobic002G122600--Sobic010G268300 Sobic002G309800 Sobic002G309800 Sobic002G122600--Sobic002G309800 Sobic004G083700 Sobic004G083700 Sobic002G122600--Sobic004G083700 Sobic002G122600--Sobic001G429300 Sobic003G078800 Sobic003G078800 Sobic002G122600--Sobic003G078800 Sobic003G196900 Sobic003G196900 Sobic002G122600--Sobic003G196900 Sobic002G122600--Sobic009G017400 Sobic006G273200 Sobic006G273200 Sobic008G165700--Sobic006G273200 Sobic009G233300 Sobic009G233300 Sobic008G165700--Sobic009G233300 Sobic008G165700--Sobic010G268300 Sobic002G187801 Sobic002G187801 Sobic008G165700--Sobic002G187801 Sobic002G365100 Sobic002G365100 Sobic008G165700--Sobic002G365100 Sobic001G191100 Sobic001G191100 Sobic008G165700--Sobic001G191100 Sobic008G165700--Sobic003G123000 Sobic003G018900 Sobic003G018900 Sobic008G165700--Sobic003G018900 Sobic003G000150 Sobic003G000150 Sobic008G165700--Sobic003G000150 Sobic009G198900 Sobic009G198900 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic003G324000 Sobic003G324000 Sobic010G280100--Sobic003G324000 Sobic007G052900 Sobic007G052900 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic009G087800 Sobic009G087800 Sobic010G280100--Sobic009G087800 Sobic007G205800 Sobic007G205800 Sobic010G280100--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic010G280100--Sobic001G368400 Sobic010G280100--Sobic006G273200 Sobic001G429300--Sobic010G268300 Sobic001G429300--Sobic010G280100 Sobic001G429300--Sobic006G273200 Sobic001G429300--Sobic002G122600 Sobic001G429300--Sobic004G083700 Sobic001G429300--Sobic008G165700 Sobic001G429300--Sobic003G018900 Sobic001G429300--Sobic006G171700 Sobic001G429300--Sobic001G281600 Sobic006G199200 Sobic006G199200 Sobic009G017400--Sobic006G199200 Sobic001G493200 Sobic001G493200 Sobic009G017400--Sobic001G493200 Sobic004G021200 Sobic004G021200 Sobic009G017400--Sobic004G021200 Sobic002G276100 Sobic002G276100 Sobic009G017400--Sobic002G276100 Sobic009G017400--Sobic001G281600 Sobic003G266001 Sobic003G266001 Sobic009G017400--Sobic003G266001 Sobic002G313400 Sobic002G313400 Sobic009G017400--Sobic002G313400 Sobic009G017400--Sobic002G122600 Sobic010G205800 Sobic010G205800 Sobic009G017400--Sobic010G205800 Sobic010G268300--Sobic001G281600 Sobic010G268300--Sobic002G122600 Sobic010G268300--Sobic008G136200 Sobic003G401100 Sobic003G401100 Sobic010G268300--Sobic003G401100 Sobic010G268300--Sobic009G215800 Sobic010G268300--Sobic004G246700 Sobic010G268300--Sobic004G021200 Sobic007G009400 Sobic007G009400 Sobic010G268300--Sobic007G009400 Sobic010G279700 Sobic010G279700 Sobic010G268300--Sobic010G279700 Sobic009G094800 Sobic009G094800 Sobic002G174900--Sobic009G094800 Sobic003G368800 Sobic003G368800 Sobic002G174900--Sobic003G368800 Sobic003G308700 Sobic003G308700 Sobic002G174900--Sobic003G308700 Sobic002G040800 Sobic002G040800 Sobic002G174900--Sobic002G040800 Sobic002G174900--Sobic008G165700 Sobic001G377000 Sobic001G377000 Sobic002G174900--Sobic001G377000 Sobic002G174900--Sobic006G171700 Sobic007G148200 Sobic007G148200 Sobic002G174900--Sobic007G148200 Sobic001G279200 Sobic001G279200 Sobic002G174900--Sobic001G279200
Octagon: transcription factors


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