Gene annotation
Transcriptome id Sobic.005G008001.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGQ9
Pfam -
Panther DB PTHR33115 PTHR33115:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18980 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os05g14930.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G082200 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.003G408400 PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
3 Sobic.001G377000 auxin-repressed protein, putative, expressed -
4 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
5 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
6 Sobic.006G053700 ACT domain containing protein, expressed -
7 Sobic.010G075700 - -
8 Sobic.002G226000 leucine-rich repeat family protein, putative, expressed -
9 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
10 Sobic.007G071000 no apical meristem protein, putative, expressed -
11 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
12 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
13 Sobic.001G096866 - -
14 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
15 Sobic.001G053900 nodulin, putative, expressed -
16 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
17 Sobic.003G406700 expressed protein -
18 Sobic.008G146900 "similar to Leucine Rich Repeat family protein, expressed"(PubMedID : 29862293)@disease resistance protein, putative, expressed -
19 Sobic.003G222300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.003G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Lecithin: cholesterol acyltransferase family protein (At)(PubMedID : 27208977)@lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III


Gene co-expression network
sample Sobic005G008001 Sobic005G008001 Sobic009G082200 Sobic009G082200 Sobic005G008001--Sobic009G082200 Sobic003G408400 Sobic003G408400 Sobic005G008001--Sobic003G408400 Sobic001G377000 Sobic001G377000 Sobic005G008001--Sobic001G377000 Sobic009G154600 Sobic009G154600 Sobic005G008001--Sobic009G154600 Sobic009G213400 Sobic009G213400 Sobic005G008001--Sobic009G213400 Sobic006G053700 Sobic006G053700 Sobic005G008001--Sobic006G053700 Sobic010G075700 Sobic010G075700 Sobic005G008001--Sobic010G075700 Sobic002G226000 Sobic002G226000 Sobic005G008001--Sobic002G226000 Sobic001G031300 Sobic001G031300 Sobic005G008001--Sobic001G031300 Sobic004G088100 Sobic004G088100 Sobic009G082200--Sobic004G088100 Sobic002G040800 Sobic002G040800 Sobic009G082200--Sobic002G040800 Sobic009G082200--Sobic009G154600 Sobic009G082200--Sobic005G008001 Sobic008G125600 Sobic008G125600 Sobic009G082200--Sobic008G125600 Sobic009G082200--Sobic001G377000 Sobic002G273700 Sobic002G273700 Sobic009G082200--Sobic002G273700 Sobic009G082200--Sobic001G031300 Sobic003G222300 Sobic003G222300 Sobic009G082200--Sobic003G222300 Sobic003G308700 Sobic003G308700 Sobic003G408400--Sobic003G308700 Sobic003G408400--Sobic009G213400 Sobic004G096300 Sobic004G096300 Sobic003G408400--Sobic004G096300 Sobic001G053900 Sobic001G053900 Sobic003G408400--Sobic001G053900 Sobic003G408400--Sobic006G053700 Sobic010G280100 Sobic010G280100 Sobic003G408400--Sobic010G280100 Sobic010G245100 Sobic010G245100 Sobic003G408400--Sobic010G245100 Sobic006G172900 Sobic006G172900 Sobic003G408400--Sobic006G172900 Sobic010G184600 Sobic010G184600 Sobic003G408400--Sobic010G184600 Sobic001G191200 Sobic001G191200 Sobic001G377000--Sobic001G191200 Sobic001G377000--Sobic009G213400 Sobic001G377000--Sobic004G096300 Sobic003G406700 Sobic003G406700 Sobic001G377000--Sobic003G406700 Sobic007G148200 Sobic007G148200 Sobic001G377000--Sobic007G148200 Sobic001G293800 Sobic001G293800 Sobic001G377000--Sobic001G293800 Sobic007G071000 Sobic007G071000 Sobic001G377000--Sobic007G071000 Sobic010G172200 Sobic010G172200 Sobic001G377000--Sobic010G172200 Sobic003G264901 Sobic003G264901 Sobic001G377000--Sobic003G264901 Sobic009G154600--Sobic001G191200 Sobic003G107300 Sobic003G107300 Sobic009G154600--Sobic003G107300 Sobic001G423100 Sobic001G423100 Sobic009G154600--Sobic001G423100 Sobic008G148400 Sobic008G148400 Sobic009G154600--Sobic008G148400 Sobic010G258300 Sobic010G258300 Sobic009G154600--Sobic010G258300 Sobic009G154600--Sobic003G406700 Sobic009G154600--Sobic003G222300 Sobic009G154600--Sobic001G031300 Sobic009G154600--Sobic009G213400 Sobic009G213400--Sobic010G245100 Sobic009G213400--Sobic001G377000 Sobic009G213400--Sobic004G096300 Sobic006G273000 Sobic006G273000 Sobic009G213400--Sobic006G273000 Sobic009G213400--Sobic003G222300 Sobic009G213400--Sobic001G191200 Sobic009G213400--Sobic006G053700 Sobic001G093600 Sobic001G093600 Sobic009G213400--Sobic001G093600 Sobic010G052500 Sobic010G052500 Sobic009G213400--Sobic010G052500 Sobic006G053700--Sobic004G096300 Sobic006G053700--Sobic010G172200 Sobic007G014600 Sobic007G014600 Sobic006G053700--Sobic007G014600 Sobic006G053700--Sobic009G213400 Sobic006G053700--Sobic003G264901 Sobic002G209100 Sobic002G209100 Sobic006G053700--Sobic002G209100 Sobic002G271600 Sobic002G271600 Sobic006G053700--Sobic002G271600 Sobic001G005500 Sobic001G005500 Sobic006G053700--Sobic001G005500 Sobic007G191900 Sobic007G191900 Sobic006G053700--Sobic007G191900 Sobic005G096300 Sobic005G096300 Sobic010G075700--Sobic005G096300 Sobic004G113800 Sobic004G113800 Sobic010G075700--Sobic004G113800 Sobic003G087900 Sobic003G087900 Sobic010G075700--Sobic003G087900 Sobic001G258000 Sobic001G258000 Sobic010G075700--Sobic001G258000 Sobic004G189900 Sobic004G189900 Sobic010G075700--Sobic004G189900 Sobic008G073900 Sobic008G073900 Sobic010G075700--Sobic008G073900 Sobic010G075700--Sobic003G408400 Sobic010G075700--Sobic005G008001 Sobic001G291200 Sobic001G291200 Sobic010G075700--Sobic001G291200 Sobic009G198900 Sobic009G198900 Sobic002G226000--Sobic009G198900 Sobic003G324000 Sobic003G324000 Sobic002G226000--Sobic003G324000 Sobic002G226000--Sobic007G148200 Sobic001G543800 Sobic001G543800 Sobic002G226000--Sobic001G543800 Sobic001G194900 Sobic001G194900 Sobic002G226000--Sobic001G194900 Sobic004G153400 Sobic004G153400 Sobic002G226000--Sobic004G153400 Sobic002G226000--Sobic010G280100 Sobic006G152600 Sobic006G152600 Sobic002G226000--Sobic006G152600 Sobic009G180200 Sobic009G180200 Sobic002G226000--Sobic009G180200 Sobic001G031300--Sobic010G258300 Sobic007G076700 Sobic007G076700 Sobic001G031300--Sobic007G076700 Sobic007G205600 Sobic007G205600 Sobic001G031300--Sobic007G205600 Sobic004G035000 Sobic004G035000 Sobic001G031300--Sobic004G035000 Sobic001G031300--Sobic009G154600 Sobic001G031300--Sobic003G222300 Sobic001G031300--Sobic001G377000 Sobic001G031300--Sobic001G191200 Sobic007G110200 Sobic007G110200 Sobic001G031300--Sobic007G110200
Octagon: transcription factors


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