Gene annotation
Transcriptome id Sobic.002G226000.1
Synonym
Functional annotation leucine-rich repeat family protein, putative, expressed
UniProt A0A1B6QCW6
Pfam PF12819 PF08263
Panther DB PTHR27003:SF51 PTHR27003
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19230 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os09g28470.1 : leucine-rich repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014070
Brachypodium KQJ90518
Barley HORVU5Hr1G068360.8 , HORVU5Hr1G068360.1 , HORVU5Hr1G068360.3 , HORVU5Hr1G068360.4 , HORVU5Hr1G068360.5 , HORVU5Hr1G068360.6 , HORVU5Hr1G068360.13 , HORVU5Hr1G068360.10 , HORVU5Hr1G068360.11 , HORVU5Hr1G068360.16 , HORVU5Hr1G068360.17 , HORVU5Hr1G068360.14 , HORVU5Hr1G068360.15 , HORVU5Hr1G068360.18 , HORVU5Hr1G068360.19 , HORVU5Hr1G068360.2 , HORVU5Hr1G068360.7
Wheat TraesCS5A02G238700 , TraesCS5B02G237300 , TraesCS5D02G245600
Populus -


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cDNA sequences
Sobic.002G226000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
3 Sobic.007G148200 auxin-repressed protein, putative, expressed -
4 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
5 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
6 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.010G280100 expressed protein -
8 Sobic.006G152600 - -
9 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
10 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
11 Sobic.003G147401 - -
12 Sobic.001G377000 auxin-repressed protein, putative, expressed -
13 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
14 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
15 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
16 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
17 Sobic.003G258400 splicing factor-related, putative, expressed -
18 Sobic.006G196000 expressed protein -
19 Sobic.005G002600 - -
20 Sobic.001G511000 peptide transporter PTR3-A, putative, expressed -


Gene co-expression network
sample Sobic002G226000 Sobic002G226000 Sobic009G198900 Sobic009G198900 Sobic002G226000--Sobic009G198900 Sobic003G324000 Sobic003G324000 Sobic002G226000--Sobic003G324000 Sobic007G148200 Sobic007G148200 Sobic002G226000--Sobic007G148200 Sobic001G543800 Sobic001G543800 Sobic002G226000--Sobic001G543800 Sobic001G194900 Sobic001G194900 Sobic002G226000--Sobic001G194900 Sobic004G153400 Sobic004G153400 Sobic002G226000--Sobic004G153400 Sobic010G280100 Sobic010G280100 Sobic002G226000--Sobic010G280100 Sobic006G152600 Sobic006G152600 Sobic002G226000--Sobic006G152600 Sobic009G180200 Sobic009G180200 Sobic002G226000--Sobic009G180200 Sobic009G198900--Sobic003G324000 Sobic009G087800 Sobic009G087800 Sobic009G198900--Sobic009G087800 Sobic009G198900--Sobic010G280100 Sobic003G258400 Sobic003G258400 Sobic009G198900--Sobic003G258400 Sobic005G187200 Sobic005G187200 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G110366 Sobic009G110366 Sobic009G198900--Sobic009G110366 Sobic007G205800 Sobic007G205800 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic003G324000--Sobic009G087800 Sobic003G324000--Sobic003G258400 Sobic001G377000 Sobic001G377000 Sobic007G148200--Sobic001G377000 Sobic004G275200 Sobic004G275200 Sobic007G148200--Sobic004G275200 Sobic007G148200--Sobic002G226000 Sobic007G148200--Sobic006G152600 Sobic001G293800 Sobic001G293800 Sobic007G148200--Sobic001G293800 Sobic007G120401 Sobic007G120401 Sobic007G148200--Sobic007G120401 Sobic007G148200--Sobic004G153400 Sobic002G046800 Sobic002G046800 Sobic007G148200--Sobic002G046800 Sobic004G153501 Sobic004G153501 Sobic007G148200--Sobic004G153501 Sobic010G001600 Sobic010G001600 Sobic001G543800--Sobic010G001600 Sobic005G177800 Sobic005G177800 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic006G124900 Sobic006G124900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic004G196700 Sobic004G196700 Sobic001G543800--Sobic004G196700 Sobic008G024600 Sobic008G024600 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic008G160700 Sobic008G160700 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic007G130600 Sobic007G130600 Sobic001G194900--Sobic007G130600 Sobic001G194900--Sobic005G187200 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic005G130200 Sobic005G130200 Sobic001G194900--Sobic005G130200 Sobic004G153400--Sobic004G153501 Sobic004G153400--Sobic002G046800 Sobic003G093300 Sobic003G093300 Sobic004G153400--Sobic003G093300 Sobic001G111500 Sobic001G111500 Sobic004G153400--Sobic001G111500 Sobic001G123000 Sobic001G123000 Sobic004G153400--Sobic001G123000 Sobic004G153400--Sobic002G226000 Sobic001G111366 Sobic001G111366 Sobic004G153400--Sobic001G111366 Sobic004G153400--Sobic007G148200 Sobic004G153400--Sobic009G235900 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic010G280100--Sobic003G324000 Sobic007G052900 Sobic007G052900 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic010G280100--Sobic009G087800 Sobic010G280100--Sobic007G205800 Sobic010G280100--Sobic001G368400 Sobic006G273200 Sobic006G273200 Sobic010G280100--Sobic006G273200 Sobic006G152600--Sobic004G275200 Sobic006G152600--Sobic007G148200 Sobic005G129400 Sobic005G129400 Sobic006G152600--Sobic005G129400 Sobic006G152600--Sobic002G226000 Sobic004G153600 Sobic004G153600 Sobic006G152600--Sobic004G153600 Sobic008G094700 Sobic008G094700 Sobic006G152600--Sobic008G094700 Sobic002G020800 Sobic002G020800 Sobic006G152600--Sobic002G020800 Sobic001G465100 Sobic001G465100 Sobic006G152600--Sobic001G465100 Sobic007G154701 Sobic007G154701 Sobic006G152600--Sobic007G154701 Sobic004G199600 Sobic004G199600 Sobic009G180200--Sobic004G199600 Sobic001G363100 Sobic001G363100 Sobic009G180200--Sobic001G363100 Sobic009G109450 Sobic009G109450 Sobic009G180200--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G180200--Sobic009G078500 Sobic007G023700 Sobic007G023700 Sobic009G180200--Sobic007G023700 Sobic009G231300 Sobic009G231300 Sobic009G180200--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic009G180200--Sobic005G130100 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800
Octagon: transcription factors


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