Gene annotation
Transcriptome id Sobic.003G147401.1
Synonym -
Functional annotation -
UniProt A0A1W0VXE0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G17600 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g29710.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a024324
Brachypodium KQK18127 , KQK18126 , KQK18125 , PNT75844 , PNT75846 , PNT75845 , KQK06442 , KQK06441 , PNT71341 , PNT71340
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
2 Sobic.002G226000 leucine-rich repeat family protein, putative, expressed -
3 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
4 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
5 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
7 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
8 Sobic.001G078900 MYB(PubMedID : 28944535)@MYB family transcription factor, putative, expressed -
9 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -
10 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
12 Sobic.006G196000 expressed protein -
13 Sobic.007G023700 MA3 domain containing protein, expressed -
14 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.005G085200 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
17 Sobic.002G039500 expressed protein -
18 Sobic.009G109450 - -
19 Sobic.001G078200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.007G154701 - -


Gene co-expression network
sample Sobic003G147401 Sobic003G147401 Sobic009G180200 Sobic009G180200 Sobic003G147401--Sobic009G180200 Sobic002G226000 Sobic002G226000 Sobic003G147401--Sobic002G226000 Sobic004G325900 Sobic004G325900 Sobic003G147401--Sobic004G325900 Sobic004G221900 Sobic004G221900 Sobic003G147401--Sobic004G221900 Sobic005G085600 Sobic005G085600 Sobic003G147401--Sobic005G085600 Sobic001G032100 Sobic001G032100 Sobic003G147401--Sobic001G032100 Sobic009G198900 Sobic009G198900 Sobic003G147401--Sobic009G198900 Sobic001G078900 Sobic001G078900 Sobic003G147401--Sobic001G078900 Sobic001G363100 Sobic001G363100 Sobic003G147401--Sobic001G363100 Sobic004G199600 Sobic004G199600 Sobic009G180200--Sobic004G199600 Sobic009G180200--Sobic001G363100 Sobic009G109450 Sobic009G109450 Sobic009G180200--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G180200--Sobic009G078500 Sobic007G023700 Sobic007G023700 Sobic009G180200--Sobic007G023700 Sobic009G231300 Sobic009G231300 Sobic009G180200--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic009G180200--Sobic005G130100 Sobic003G258400 Sobic003G258400 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800 Sobic002G226000--Sobic009G198900 Sobic003G324000 Sobic003G324000 Sobic002G226000--Sobic003G324000 Sobic007G148200 Sobic007G148200 Sobic002G226000--Sobic007G148200 Sobic001G543800 Sobic001G543800 Sobic002G226000--Sobic001G543800 Sobic001G194900 Sobic001G194900 Sobic002G226000--Sobic001G194900 Sobic004G153400 Sobic004G153400 Sobic002G226000--Sobic004G153400 Sobic010G280100 Sobic010G280100 Sobic002G226000--Sobic010G280100 Sobic006G152600 Sobic006G152600 Sobic002G226000--Sobic006G152600 Sobic002G226000--Sobic009G180200 Sobic004G325900--Sobic001G078900 Sobic007G154701 Sobic007G154701 Sobic004G325900--Sobic007G154701 Sobic006G241350 Sobic006G241350 Sobic004G325900--Sobic006G241350 Sobic001G465100 Sobic001G465100 Sobic004G325900--Sobic001G465100 Sobic004G325900--Sobic003G147401 Sobic003G123300 Sobic003G123300 Sobic004G325900--Sobic003G123300 Sobic006G241600 Sobic006G241600 Sobic004G325900--Sobic006G241600 Sobic003G379700 Sobic003G379700 Sobic004G325900--Sobic003G379700 Sobic004G325900--Sobic001G032100 Sobic004G221900--Sobic007G023700 Sobic004G221900--Sobic001G363100 Sobic004G221900--Sobic009G180200 Sobic007G156500 Sobic007G156500 Sobic004G221900--Sobic007G156500 Sobic003G296600 Sobic003G296600 Sobic004G221900--Sobic003G296600 Sobic002G108800 Sobic002G108800 Sobic004G221900--Sobic002G108800 Sobic006G184300 Sobic006G184300 Sobic004G221900--Sobic006G184300 Sobic004G221900--Sobic001G032100 Sobic002G039500 Sobic002G039500 Sobic004G221900--Sobic002G039500 Sobic005G085200 Sobic005G085200 Sobic005G085600--Sobic005G085200 Sobic007G189800 Sobic007G189800 Sobic005G085600--Sobic007G189800 Sobic005G085600--Sobic001G032100 Sobic005G085600--Sobic009G180200 Sobic005G085600--Sobic001G363100 Sobic009G159700 Sobic009G159700 Sobic005G085600--Sobic009G159700 Sobic005G085600--Sobic004G199600 Sobic005G085600--Sobic009G078500 Sobic010G057300 Sobic010G057300 Sobic005G085600--Sobic010G057300 Sobic001G032100--Sobic003G296600 Sobic001G032100--Sobic005G085600 Sobic001G247400 Sobic001G247400 Sobic001G032100--Sobic001G247400 Sobic006G194150 Sobic006G194150 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic003G293900 Sobic003G293900 Sobic001G032100--Sobic003G293900 Sobic001G225100 Sobic001G225100 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic009G198900--Sobic003G324000 Sobic009G087800 Sobic009G087800 Sobic009G198900--Sobic009G087800 Sobic009G198900--Sobic010G280100 Sobic009G198900--Sobic003G258400 Sobic005G187200 Sobic005G187200 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G110366 Sobic009G110366 Sobic009G198900--Sobic009G110366 Sobic007G205800 Sobic007G205800 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic001G078900--Sobic004G325900 Sobic001G078900--Sobic001G465100 Sobic001G078900--Sobic006G241350 Sobic001G078900--Sobic002G226000 Sobic002G367700 Sobic002G367700 Sobic001G078900--Sobic002G367700 Sobic001G078900--Sobic003G123300 Sobic003G178700 Sobic003G178700 Sobic001G078900--Sobic003G178700 Sobic001G078900--Sobic003G147401 Sobic002G380400 Sobic002G380400 Sobic001G078900--Sobic002G380400 Sobic001G363100--Sobic009G180200 Sobic005G003200 Sobic005G003200 Sobic001G363100--Sobic005G003200 Sobic006G249000 Sobic006G249000 Sobic001G363100--Sobic006G249000 Sobic001G363100--Sobic009G078500 Sobic001G363100--Sobic004G199600 Sobic001G363100--Sobic005G130100 Sobic010G146200 Sobic010G146200 Sobic001G363100--Sobic010G146200 Sobic001G363100--Sobic005G085600 Sobic001G363100--Sobic004G221900
Octagon: transcription factors


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