Gene annotation
Transcriptome id Sobic.008G001400.1
Synonym Sb08g000310
Functional annotation expressed protein
UniProt C5YPQ5
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G54970 : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
RAP-DB (Rice) LOC_Os02g15360.1 : expressed protein
MaizeGDB (Corn) Zm00025a033258
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.008G001400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.010G113000 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
3 Sobic.005G129400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G175200 - -
5 Sobic.007G120401 - -
6 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
7 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase
8 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
9 Sobic.009G082200 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.003G368800 expressed protein -
11 Sobic.009G245700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G131300 bacterial transferase hexapeptide domain containing protein, expressed -
13 Sobic.002G073900 expressed protein -
14 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
15 Sobic.001G320200 phospholipase D, putative, expressed K01115: phospholipase D1/2
16 Sobic.003G053900 zinc finger, C3HC4 type family protein, expressed -
17 Sobic.002G130700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed -
18 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.004G174100 expressed protein -
20 Sobic.007G148200 auxin-repressed protein, putative, expressed -


Gene co-expression network
sample Sobic008G001400 Sobic008G001400 Sobic002G040800 Sobic002G040800 Sobic008G001400--Sobic002G040800 Sobic010G113000 Sobic010G113000 Sobic008G001400--Sobic010G113000 Sobic005G129400 Sobic005G129400 Sobic008G001400--Sobic005G129400 Sobic004G175200 Sobic004G175200 Sobic008G001400--Sobic004G175200 Sobic007G120401 Sobic007G120401 Sobic008G001400--Sobic007G120401 Sobic002G273700 Sobic002G273700 Sobic008G001400--Sobic002G273700 Sobic002G174900 Sobic002G174900 Sobic008G001400--Sobic002G174900 Sobic003G206800 Sobic003G206800 Sobic008G001400--Sobic003G206800 Sobic009G082200 Sobic009G082200 Sobic008G001400--Sobic009G082200 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G040800--Sobic002G174900 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic006G042200 Sobic006G042200 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic009G148900 Sobic009G148900 Sobic010G113000--Sobic009G148900 Sobic007G029100 Sobic007G029100 Sobic010G113000--Sobic007G029100 Sobic007G110200 Sobic007G110200 Sobic010G113000--Sobic007G110200 Sobic003G222300 Sobic003G222300 Sobic010G113000--Sobic003G222300 Sobic009G029700 Sobic009G029700 Sobic010G113000--Sobic009G029700 Sobic009G017400 Sobic009G017400 Sobic010G113000--Sobic009G017400 Sobic010G113000--Sobic008G001400 Sobic006G153900 Sobic006G153900 Sobic010G113000--Sobic006G153900 Sobic001G380500 Sobic001G380500 Sobic010G113000--Sobic001G380500 Sobic006G152600 Sobic006G152600 Sobic005G129400--Sobic006G152600 Sobic004G275200 Sobic004G275200 Sobic005G129400--Sobic004G275200 Sobic001G123000 Sobic001G123000 Sobic005G129400--Sobic001G123000 Sobic002G130700 Sobic002G130700 Sobic005G129400--Sobic002G130700 Sobic005G129400--Sobic008G001400 Sobic009G245700 Sobic009G245700 Sobic005G129400--Sobic009G245700 Sobic007G148200 Sobic007G148200 Sobic005G129400--Sobic007G148200 Sobic001G427500 Sobic001G427500 Sobic005G129400--Sobic001G427500 Sobic010G084000 Sobic010G084000 Sobic005G129400--Sobic010G084000 Sobic004G175200--Sobic008G001400 Sobic009G227900 Sobic009G227900 Sobic004G175200--Sobic009G227900 Sobic004G227300 Sobic004G227300 Sobic004G175200--Sobic004G227300 Sobic002G131300 Sobic002G131300 Sobic004G175200--Sobic002G131300 Sobic004G250300 Sobic004G250300 Sobic004G175200--Sobic004G250300 Sobic001G045000 Sobic001G045000 Sobic004G175200--Sobic001G045000 Sobic003G053900 Sobic003G053900 Sobic004G175200--Sobic003G053900 Sobic004G175200--Sobic003G368800 Sobic004G174100 Sobic004G174100 Sobic004G175200--Sobic004G174100 Sobic007G120401--Sobic007G148200 Sobic001G372500 Sobic001G372500 Sobic007G120401--Sobic001G372500 Sobic009G154600 Sobic009G154600 Sobic007G120401--Sobic009G154600 Sobic007G202800 Sobic007G202800 Sobic007G120401--Sobic007G202800 Sobic007G120401--Sobic004G275200 Sobic002G125900 Sobic002G125900 Sobic007G120401--Sobic002G125900 Sobic001G191200 Sobic001G191200 Sobic007G120401--Sobic001G191200 Sobic007G120401--Sobic008G001400 Sobic007G120401--Sobic002G273700 Sobic007G054100 Sobic007G054100 Sobic002G273700--Sobic007G054100 Sobic003G308700 Sobic003G308700 Sobic002G273700--Sobic003G308700 Sobic004G340700 Sobic004G340700 Sobic002G273700--Sobic004G340700 Sobic002G373100 Sobic002G373100 Sobic002G273700--Sobic002G373100 Sobic002G273700--Sobic002G040800 Sobic002G273700--Sobic008G001400 Sobic002G273700--Sobic007G120401 Sobic002G273700--Sobic009G082200 Sobic002G273700--Sobic006G042200 Sobic002G174900--Sobic009G094800 Sobic002G174900--Sobic003G368800 Sobic002G174900--Sobic003G308700 Sobic002G174900--Sobic002G040800 Sobic008G165700 Sobic008G165700 Sobic002G174900--Sobic008G165700 Sobic001G377000 Sobic001G377000 Sobic002G174900--Sobic001G377000 Sobic006G171700 Sobic006G171700 Sobic002G174900--Sobic006G171700 Sobic002G174900--Sobic007G148200 Sobic001G279200 Sobic001G279200 Sobic002G174900--Sobic001G279200 Sobic002G048800 Sobic002G048800 Sobic003G206800--Sobic002G048800 Sobic001G320200 Sobic001G320200 Sobic003G206800--Sobic001G320200 Sobic001G340700 Sobic001G340700 Sobic003G206800--Sobic001G340700 Sobic003G314500 Sobic003G314500 Sobic003G206800--Sobic003G314500 Sobic003G206800--Sobic002G130700 Sobic003G206800--Sobic008G001400 Sobic002G073900 Sobic002G073900 Sobic003G206800--Sobic002G073900 Sobic008G142600 Sobic008G142600 Sobic003G206800--Sobic008G142600 Sobic001G427200 Sobic001G427200 Sobic003G206800--Sobic001G427200 Sobic004G088100 Sobic004G088100 Sobic009G082200--Sobic004G088100 Sobic009G082200--Sobic002G040800 Sobic009G082200--Sobic009G154600 Sobic005G008001 Sobic005G008001 Sobic009G082200--Sobic005G008001 Sobic008G125600 Sobic008G125600 Sobic009G082200--Sobic008G125600 Sobic009G082200--Sobic001G377000 Sobic009G082200--Sobic002G273700 Sobic001G031300 Sobic001G031300 Sobic009G082200--Sobic001G031300 Sobic009G082200--Sobic003G222300
Octagon: transcription factors


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