Gene annotation
Transcriptome id Sobic.003G053900.1
Synonym
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt A0A1B6Q1I2
Pfam PF13920
Panther DB PTHR15860 PTHR15860:SF3
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01960 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g07390.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a041739 , Zm00025a023294 , Zm00025a035702 , Zm00025a047597
Brachypodium KQK07305 , KQK02870
Barley HORVU3Hr1G017160.2 , HORVU3Hr1G017160.3 , HORVU3Hr1G017160.1 , HORVU3Hr1G017160.6 , HORVU3Hr1G017160.7 , HORVU3Hr1G017160.4 , HORVU3Hr1G017160.5 , HORVU1Hr1G024740.2 , HORVU1Hr1G024740.3 , HORVU1Hr1G024740.1
Wheat TraesCS3A02G095400 , TraesCS1D02G114200 , TraesCS3B02G111000 , TraesCS1A02G112600 , TraesCS3D02G095600
Populus -


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cDNA sequences
Sobic.003G053900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368800 expressed protein -
2 Sobic.004G190700 zinc finger, C3HC4 type, putative, expressed -
3 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
4 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
5 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
6 Sobic.004G175200 - -
7 Sobic.001G418800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
8 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
9 Sobic.008G001400 expressed protein -
10 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
11 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
12 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
13 Sobic.001G043400 expressed protein -
14 Sobic.003G004700 SOUL heme-binding protein, putative, expressed -
15 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
16 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
17 Sobic.005G025300 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase
18 Sobic.009G227900 expressed protein K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
20 Sobic.001G416300 expressed protein -


Gene co-expression network
sample Sobic003G053900 Sobic003G053900 Sobic003G368800 Sobic003G368800 Sobic003G053900--Sobic003G368800 Sobic004G190700 Sobic004G190700 Sobic003G053900--Sobic004G190700 Sobic009G029700 Sobic009G029700 Sobic003G053900--Sobic009G029700 Sobic007G029100 Sobic007G029100 Sobic003G053900--Sobic007G029100 Sobic001G380500 Sobic001G380500 Sobic003G053900--Sobic001G380500 Sobic004G175200 Sobic004G175200 Sobic003G053900--Sobic004G175200 Sobic001G418800 Sobic001G418800 Sobic003G053900--Sobic001G418800 Sobic006G058800 Sobic006G058800 Sobic003G053900--Sobic006G058800 Sobic008G001400 Sobic008G001400 Sobic003G053900--Sobic008G001400 Sobic001G144600 Sobic001G144600 Sobic003G368800--Sobic001G144600 Sobic002G174900 Sobic002G174900 Sobic003G368800--Sobic002G174900 Sobic005G025300 Sobic005G025300 Sobic003G368800--Sobic005G025300 Sobic002G040800 Sobic002G040800 Sobic003G368800--Sobic002G040800 Sobic004G147200 Sobic004G147200 Sobic003G368800--Sobic004G147200 Sobic002G227200 Sobic002G227200 Sobic003G368800--Sobic002G227200 Sobic004G227300 Sobic004G227300 Sobic003G368800--Sobic004G227300 Sobic001G276200 Sobic001G276200 Sobic003G368800--Sobic001G276200 Sobic001G429300 Sobic001G429300 Sobic003G368800--Sobic001G429300 Sobic007G073700 Sobic007G073700 Sobic004G190700--Sobic007G073700 Sobic004G190700--Sobic007G029100 Sobic002G428800 Sobic002G428800 Sobic004G190700--Sobic002G428800 Sobic004G190700--Sobic003G053900 Sobic004G302150 Sobic004G302150 Sobic004G190700--Sobic004G302150 Sobic003G134000 Sobic003G134000 Sobic004G190700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic004G190700--Sobic001G501300 Sobic007G200900 Sobic007G200900 Sobic004G190700--Sobic007G200900 Sobic003G378400 Sobic003G378400 Sobic004G190700--Sobic003G378400 Sobic009G029700--Sobic001G380500 Sobic004G268100 Sobic004G268100 Sobic009G029700--Sobic004G268100 Sobic009G029700--Sobic007G029100 Sobic004G117800 Sobic004G117800 Sobic009G029700--Sobic004G117800 Sobic001G437200 Sobic001G437200 Sobic009G029700--Sobic001G437200 Sobic002G039000 Sobic002G039000 Sobic009G029700--Sobic002G039000 Sobic003G310100 Sobic003G310100 Sobic009G029700--Sobic003G310100 Sobic002G281800 Sobic002G281800 Sobic009G029700--Sobic002G281800 Sobic001G202500 Sobic001G202500 Sobic009G029700--Sobic001G202500 Sobic002G404200 Sobic002G404200 Sobic007G029100--Sobic002G404200 Sobic007G029100--Sobic009G029700 Sobic007G029100--Sobic001G380500 Sobic010G113000 Sobic010G113000 Sobic007G029100--Sobic010G113000 Sobic010G080300 Sobic010G080300 Sobic007G029100--Sobic010G080300 Sobic001G341800 Sobic001G341800 Sobic007G029100--Sobic001G341800 Sobic007G029100--Sobic002G281800 Sobic007G029100--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic007G029100--Sobic005G064800 Sobic001G380500--Sobic009G029700 Sobic010G108900 Sobic010G108900 Sobic001G380500--Sobic010G108900 Sobic007G168200 Sobic007G168200 Sobic001G380500--Sobic007G168200 Sobic001G380500--Sobic007G029100 Sobic001G218800 Sobic001G218800 Sobic001G380500--Sobic001G218800 Sobic001G380500--Sobic002G039000 Sobic006G168400 Sobic006G168400 Sobic001G380500--Sobic006G168400 Sobic001G380500--Sobic001G418800 Sobic001G380500--Sobic002G404200 Sobic004G175200--Sobic008G001400 Sobic009G227900 Sobic009G227900 Sobic004G175200--Sobic009G227900 Sobic004G175200--Sobic004G227300 Sobic002G131300 Sobic002G131300 Sobic004G175200--Sobic002G131300 Sobic004G250300 Sobic004G250300 Sobic004G175200--Sobic004G250300 Sobic001G045000 Sobic001G045000 Sobic004G175200--Sobic001G045000 Sobic004G175200--Sobic003G053900 Sobic004G175200--Sobic003G368800 Sobic004G174100 Sobic004G174100 Sobic004G175200--Sobic004G174100 Sobic001G418800--Sobic001G380500 Sobic001G418800--Sobic001G218800 Sobic001G418800--Sobic002G174900 Sobic006G028300 Sobic006G028300 Sobic001G418800--Sobic006G028300 Sobic001G418800--Sobic010G108900 Sobic001G151900 Sobic001G151900 Sobic001G418800--Sobic001G151900 Sobic001G222900 Sobic001G222900 Sobic001G418800--Sobic001G222900 Sobic003G004700 Sobic003G004700 Sobic001G418800--Sobic003G004700 Sobic002G339500 Sobic002G339500 Sobic001G418800--Sobic002G339500 Sobic001G085800 Sobic001G085800 Sobic006G058800--Sobic001G085800 Sobic006G089400 Sobic006G089400 Sobic006G058800--Sobic006G089400 Sobic006G058800--Sobic003G134000 Sobic003G246000 Sobic003G246000 Sobic006G058800--Sobic003G246000 Sobic006G125900 Sobic006G125900 Sobic006G058800--Sobic006G125900 Sobic004G176000 Sobic004G176000 Sobic006G058800--Sobic004G176000 Sobic002G386600 Sobic002G386600 Sobic006G058800--Sobic002G386600 Sobic002G092050 Sobic002G092050 Sobic006G058800--Sobic002G092050 Sobic007G097400 Sobic007G097400 Sobic006G058800--Sobic007G097400 Sobic008G001400--Sobic002G040800 Sobic008G001400--Sobic010G113000 Sobic005G129400 Sobic005G129400 Sobic008G001400--Sobic005G129400 Sobic008G001400--Sobic004G175200 Sobic007G120401 Sobic007G120401 Sobic008G001400--Sobic007G120401 Sobic002G273700 Sobic002G273700 Sobic008G001400--Sobic002G273700 Sobic008G001400--Sobic002G174900 Sobic003G206800 Sobic003G206800 Sobic008G001400--Sobic003G206800 Sobic009G082200 Sobic009G082200 Sobic008G001400--Sobic009G082200
Octagon: transcription factors


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