Gene annotation
Transcriptome id Sobic.005G145300.1
Synonym Sb05g021030, ADO3, FKF1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBO10 - F-box and other domain containing protein, expressed
UniProt A0A1Z5RIQ1
Pfam PF00646 PF13426 PF07646 PF13415 PF13418
Panther DB PTHR23244 PTHR23244:SF263
NCBI CDD KOG4693; Uncharacterized conserved protein, contains kelch repeat
KEGG Orthology K12116; flavin-binding kelch repeat F-box protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G68050 : flavin-binding, kelch repeat, f box 1
RAP-DB (Rice) LOC_Os11g34460.1 : OsFBO10 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034073 , Zm00025a015726
Brachypodium KQJ88262 , KQJ88263 , KQJ88260 , KQJ88261
Barley -
Wheat TraesCS4B02G157500 , TraesCS4A02G164000
Populus -


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cDNA sequences
Sobic.005G145300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
2 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
3 Sobic.004G296000 ceramide kinase-related, putative, expressed K04715: ceramide kinase
4 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
5 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
6 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
7 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
8 Sobic.010G074200 - -
9 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
10 Sobic.009G062800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
11 Sobic.010G039200 cysteine synthase, putative, expressed K01738: cysteine synthase
12 Sobic.001G426400 expressed protein -
13 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
14 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
16 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
17 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
19 Sobic.010G143500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan water dikinase, chloroplast precursor, putative, expressed K08244: alpha-glucan, water dikinase
20 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -


Gene co-expression network
sample Sobic005G145300 Sobic005G145300 Sobic001G367500 Sobic001G367500 Sobic005G145300--Sobic001G367500 Sobic008G148400 Sobic008G148400 Sobic005G145300--Sobic008G148400 Sobic004G296000 Sobic004G296000 Sobic005G145300--Sobic004G296000 Sobic009G238100 Sobic009G238100 Sobic005G145300--Sobic009G238100 Sobic003G030400 Sobic003G030400 Sobic005G145300--Sobic003G030400 Sobic001G114400 Sobic001G114400 Sobic005G145300--Sobic001G114400 Sobic009G036300 Sobic009G036300 Sobic005G145300--Sobic009G036300 Sobic010G074200 Sobic010G074200 Sobic005G145300--Sobic010G074200 Sobic010G074100 Sobic010G074100 Sobic005G145300--Sobic010G074100 Sobic001G367500--Sobic005G145300 Sobic001G367500--Sobic009G238100 Sobic001G367500--Sobic009G036300 Sobic006G186000 Sobic006G186000 Sobic001G367500--Sobic006G186000 Sobic003G332900 Sobic003G332900 Sobic001G367500--Sobic003G332900 Sobic001G367500--Sobic010G074100 Sobic001G367500--Sobic008G148400 Sobic001G367500--Sobic003G030400 Sobic001G367500--Sobic010G074200 Sobic008G148400--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic008G148400--Sobic001G426400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic007G131200 Sobic007G131200 Sobic008G148400--Sobic007G131200 Sobic009G233800 Sobic009G233800 Sobic008G148400--Sobic009G233800 Sobic006G265400 Sobic006G265400 Sobic008G148400--Sobic006G265400 Sobic004G296000--Sobic005G145300 Sobic010G039200 Sobic010G039200 Sobic004G296000--Sobic010G039200 Sobic004G296000--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic004G296000--Sobic001G207200 Sobic004G231600 Sobic004G231600 Sobic004G296000--Sobic004G231600 Sobic004G296000--Sobic010G074200 Sobic004G144000 Sobic004G144000 Sobic004G296000--Sobic004G144000 Sobic004G296000--Sobic001G114400 Sobic007G227600 Sobic007G227600 Sobic004G296000--Sobic007G227600 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500 Sobic001G114400--Sobic003G222600 Sobic002G191100 Sobic002G191100 Sobic001G114400--Sobic002G191100 Sobic001G114400--Sobic003G030400 Sobic001G114400--Sobic009G036300 Sobic001G114400--Sobic004G070200 Sobic001G114400--Sobic008G148400 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic009G036300--Sobic007G227600 Sobic001G388400 Sobic001G388400 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic010G028000 Sobic010G028000 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G234200 Sobic009G234200 Sobic009G036300--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic010G074200--Sobic006G204100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic010G074200--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic010G074200--Sobic003G330100 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic010G074100--Sobic009G036300 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic010G074100--Sobic009G233800 Sobic010G074100--Sobic010G211500 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800
Octagon: transcription factors


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