Gene annotation
Transcriptome id Sobic.010G039200.1
Synonym ATCS-C, OASC
Functional annotation cysteine synthase, putative, expressed
UniProt A0A194YH86
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF114
NCBI CDD KOG1252; Cystathionine beta-synthase and related enzymes
KEGG Orthology K01738; cysteine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43750 : O-acetylserine (thiol) lyase B
RAP-DB (Rice) LOC_Os06g36840.1 : cysteine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a050024 , Zm00025a050020
Brachypodium KQK19850 , PNT76631
Barley HORVU7Hr1G021840.18 , HORVU7Hr1G021840.19 , HORVU7Hr1G021840.22 , HORVU7Hr1G021840.21 , HORVU7Hr1G021840.20
Wheat TraesCS4A02G401700 , TraesCS4A02G401700 , TraesCS7D02G096800 , TraesCS7A02G102800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
2 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
3 Sobic.004G296000 ceramide kinase-related, putative, expressed K04715: ceramide kinase
4 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
5 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
6 Sobic.001G207200 MEE12, putative, expressed -
7 Sobic.003G297800 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
8 Sobic.009G094700 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
9 Sobic.004G265900 class I glutamine amidotransferase, putative, expressed K01956: carA, carbamoyl-phosphate synthase small subunit
10 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
11 Sobic.009G062800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
12 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
13 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
14 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
15 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
16 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
17 Sobic.004G144000 - -
18 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
19 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.007G029500 expressed protein -


Gene co-expression network
sample Sobic010G039200 Sobic010G039200 Sobic001G114400 Sobic001G114400 Sobic010G039200--Sobic001G114400 Sobic005G145300 Sobic005G145300 Sobic010G039200--Sobic005G145300 Sobic004G296000 Sobic004G296000 Sobic010G039200--Sobic004G296000 Sobic001G224200 Sobic001G224200 Sobic010G039200--Sobic001G224200 Sobic004G290000 Sobic004G290000 Sobic010G039200--Sobic004G290000 Sobic001G207200 Sobic001G207200 Sobic010G039200--Sobic001G207200 Sobic003G297800 Sobic003G297800 Sobic010G039200--Sobic003G297800 Sobic009G094700 Sobic009G094700 Sobic010G039200--Sobic009G094700 Sobic004G265900 Sobic004G265900 Sobic010G039200--Sobic004G265900 Sobic003G222600 Sobic003G222600 Sobic001G114400--Sobic003G222600 Sobic002G191100 Sobic002G191100 Sobic001G114400--Sobic002G191100 Sobic003G030400 Sobic003G030400 Sobic001G114400--Sobic003G030400 Sobic009G036300 Sobic009G036300 Sobic001G114400--Sobic009G036300 Sobic004G070200 Sobic004G070200 Sobic001G114400--Sobic004G070200 Sobic008G148400 Sobic008G148400 Sobic001G114400--Sobic008G148400 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic001G367500 Sobic001G367500 Sobic005G145300--Sobic001G367500 Sobic005G145300--Sobic008G148400 Sobic005G145300--Sobic004G296000 Sobic009G238100 Sobic009G238100 Sobic005G145300--Sobic009G238100 Sobic005G145300--Sobic003G030400 Sobic005G145300--Sobic001G114400 Sobic005G145300--Sobic009G036300 Sobic010G074200 Sobic010G074200 Sobic005G145300--Sobic010G074200 Sobic010G074100 Sobic010G074100 Sobic005G145300--Sobic010G074100 Sobic004G296000--Sobic005G145300 Sobic004G296000--Sobic010G039200 Sobic004G296000--Sobic009G036300 Sobic004G296000--Sobic001G207200 Sobic004G231600 Sobic004G231600 Sobic004G296000--Sobic004G231600 Sobic004G296000--Sobic010G074200 Sobic004G144000 Sobic004G144000 Sobic004G296000--Sobic004G144000 Sobic004G296000--Sobic001G114400 Sobic007G227600 Sobic007G227600 Sobic004G296000--Sobic007G227600 Sobic008G165900 Sobic008G165900 Sobic001G224200--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic001G224200--Sobic006G128400 Sobic001G224200--Sobic001G207200 Sobic007G075800 Sobic007G075800 Sobic001G224200--Sobic007G075800 Sobic002G238000 Sobic002G238000 Sobic001G224200--Sobic002G238000 Sobic001G119600 Sobic001G119600 Sobic001G224200--Sobic001G119600 Sobic003G332900 Sobic003G332900 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic006G219300 Sobic006G219300 Sobic004G290000--Sobic006G219300 Sobic008G004300 Sobic008G004300 Sobic004G290000--Sobic008G004300 Sobic004G253100 Sobic004G253100 Sobic004G290000--Sobic004G253100 Sobic004G023100 Sobic004G023100 Sobic004G290000--Sobic004G023100 Sobic002G166300 Sobic002G166300 Sobic004G290000--Sobic002G166300 Sobic001G004400 Sobic001G004400 Sobic004G290000--Sobic001G004400 Sobic005G096400 Sobic005G096400 Sobic004G290000--Sobic005G096400 Sobic009G139900 Sobic009G139900 Sobic004G290000--Sobic009G139900 Sobic002G428800 Sobic002G428800 Sobic004G290000--Sobic002G428800 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G501300 Sobic001G501300 Sobic001G207200--Sobic001G501300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic003G297800--Sobic001G207200 Sobic006G089400 Sobic006G089400 Sobic003G297800--Sobic006G089400 Sobic005G140500 Sobic005G140500 Sobic003G297800--Sobic005G140500 Sobic003G297800--Sobic002G428800 Sobic003G297800--Sobic009G094700 Sobic003G297800--Sobic010G039200 Sobic002G092050 Sobic002G092050 Sobic003G297800--Sobic002G092050 Sobic010G143500 Sobic010G143500 Sobic003G297800--Sobic010G143500 Sobic010G176300 Sobic010G176300 Sobic003G297800--Sobic010G176300 Sobic009G094700--Sobic004G265900 Sobic009G094700--Sobic009G036300 Sobic008G089500 Sobic008G089500 Sobic009G094700--Sobic008G089500 Sobic009G094700--Sobic004G144000 Sobic003G444500 Sobic003G444500 Sobic009G094700--Sobic003G444500 Sobic003G310100 Sobic003G310100 Sobic009G094700--Sobic003G310100 Sobic005G028900 Sobic005G028900 Sobic009G094700--Sobic005G028900 Sobic003G286300 Sobic003G286300 Sobic009G094700--Sobic003G286300 Sobic010G086900 Sobic010G086900 Sobic009G094700--Sobic010G086900 Sobic004G265900--Sobic009G094700 Sobic004G265900--Sobic004G144000 Sobic004G265900--Sobic003G310100 Sobic004G265900--Sobic008G089500 Sobic004G265900--Sobic003G444500 Sobic003G330100 Sobic003G330100 Sobic004G265900--Sobic003G330100 Sobic004G265900--Sobic005G028900 Sobic010G183400 Sobic010G183400 Sobic004G265900--Sobic010G183400 Sobic008G193300 Sobic008G193300 Sobic004G265900--Sobic008G193300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.