Gene annotation
Transcriptome id Sobic.003G297800.1
Synonym Sb03g034790
Functional annotation GTP-binding protein typA/bipA, putative, expressed
UniProt C5XK57
Pfam PF01926 PF00679
Panther DB PTHR23115 PTHR23115:SF14
NCBI CDD -
KEGG Orthology K06207; typA, GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G31060 : elongation factor family protein
RAP-DB (Rice) LOC_Os01g54910.1 : GTP-binding protein typA/bipA, putative, expressed
MaizeGDB (Corn) Zm00025a027623
Brachypodium PNT72868
Barley HORVU3Hr1G072230.6 , HORVU3Hr1G072230.5 , HORVU3Hr1G072230.4 , HORVU3Hr1G072230.2 , HORVU3Hr1G072230.1 , HORVU3Hr1G072230.7 , HORVU3Hr1G072230.3
Wheat TraesCS3A02G291600 , TraesCS3B02G326200 , TraesCS3D02G291300
Populus -


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cDNA sequences
Sobic.003G297800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G207200 MEE12, putative, expressed -
2 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
3 Sobic.005G140500 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
4 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
5 Sobic.009G094700 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
6 Sobic.010G039200 cysteine synthase, putative, expressed K01738: cysteine synthase
7 Sobic.002G092050 - -
8 Sobic.010G143500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan water dikinase, chloroplast precursor, putative, expressed K08244: alpha-glucan, water dikinase
9 Sobic.010G176300 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
10 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
11 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G337800 UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed K11718: UDP-glucose:glycoprotein glucosyltransferase
13 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
14 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
15 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
16 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
18 Sobic.006G128400 PPR repeat containing protein, expressed -
19 Sobic.007G029500 expressed protein -
20 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G297800 Sobic003G297800 Sobic001G207200 Sobic001G207200 Sobic003G297800--Sobic001G207200 Sobic006G089400 Sobic006G089400 Sobic003G297800--Sobic006G089400 Sobic005G140500 Sobic005G140500 Sobic003G297800--Sobic005G140500 Sobic002G428800 Sobic002G428800 Sobic003G297800--Sobic002G428800 Sobic009G094700 Sobic009G094700 Sobic003G297800--Sobic009G094700 Sobic010G039200 Sobic010G039200 Sobic003G297800--Sobic010G039200 Sobic002G092050 Sobic002G092050 Sobic003G297800--Sobic002G092050 Sobic010G143500 Sobic010G143500 Sobic003G297800--Sobic010G143500 Sobic010G176300 Sobic010G176300 Sobic003G297800--Sobic010G176300 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G501300 Sobic001G501300 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic008G165900 Sobic008G165900 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic003G332900 Sobic003G332900 Sobic001G207200--Sobic003G332900 Sobic001G224200 Sobic001G224200 Sobic001G207200--Sobic001G224200 Sobic010G100800 Sobic010G100800 Sobic006G089400--Sobic010G100800 Sobic006G058800 Sobic006G058800 Sobic006G089400--Sobic006G058800 Sobic006G089400--Sobic001G501300 Sobic006G089400--Sobic010G143500 Sobic007G029500 Sobic007G029500 Sobic006G089400--Sobic007G029500 Sobic003G134000 Sobic003G134000 Sobic006G089400--Sobic003G134000 Sobic004G176000 Sobic004G176000 Sobic006G089400--Sobic004G176000 Sobic006G089400--Sobic001G207200 Sobic002G191100 Sobic002G191100 Sobic006G089400--Sobic002G191100 Sobic004G262700 Sobic004G262700 Sobic005G140500--Sobic004G262700 Sobic005G140500--Sobic010G100800 Sobic005G140500--Sobic002G428800 Sobic010G013300 Sobic010G013300 Sobic005G140500--Sobic010G013300 Sobic006G238700 Sobic006G238700 Sobic005G140500--Sobic006G238700 Sobic003G194100 Sobic003G194100 Sobic005G140500--Sobic003G194100 Sobic006G280000 Sobic006G280000 Sobic005G140500--Sobic006G280000 Sobic001G396000 Sobic001G396000 Sobic005G140500--Sobic001G396000 Sobic005G140500--Sobic007G029500 Sobic002G428800--Sobic005G140500 Sobic002G428800--Sobic004G262700 Sobic007G200900 Sobic007G200900 Sobic002G428800--Sobic007G200900 Sobic002G428800--Sobic001G501300 Sobic002G428800--Sobic003G134000 Sobic003G378400 Sobic003G378400 Sobic002G428800--Sobic003G378400 Sobic002G428800--Sobic010G176300 Sobic004G290000 Sobic004G290000 Sobic002G428800--Sobic004G290000 Sobic002G428800--Sobic010G100800 Sobic004G265900 Sobic004G265900 Sobic009G094700--Sobic004G265900 Sobic009G094700--Sobic009G036300 Sobic008G089500 Sobic008G089500 Sobic009G094700--Sobic008G089500 Sobic004G144000 Sobic004G144000 Sobic009G094700--Sobic004G144000 Sobic003G444500 Sobic003G444500 Sobic009G094700--Sobic003G444500 Sobic003G310100 Sobic003G310100 Sobic009G094700--Sobic003G310100 Sobic005G028900 Sobic005G028900 Sobic009G094700--Sobic005G028900 Sobic003G286300 Sobic003G286300 Sobic009G094700--Sobic003G286300 Sobic010G086900 Sobic010G086900 Sobic009G094700--Sobic010G086900 Sobic001G114400 Sobic001G114400 Sobic010G039200--Sobic001G114400 Sobic005G145300 Sobic005G145300 Sobic010G039200--Sobic005G145300 Sobic004G296000 Sobic004G296000 Sobic010G039200--Sobic004G296000 Sobic010G039200--Sobic001G224200 Sobic010G039200--Sobic004G290000 Sobic010G039200--Sobic001G207200 Sobic010G039200--Sobic003G297800 Sobic010G039200--Sobic009G094700 Sobic010G039200--Sobic004G265900 Sobic002G378100 Sobic002G378100 Sobic002G092050--Sobic002G378100 Sobic006G128400 Sobic006G128400 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic010G143500--Sobic006G089400 Sobic001G538800 Sobic001G538800 Sobic010G143500--Sobic001G538800 Sobic010G143500--Sobic005G145300 Sobic001G466800 Sobic001G466800 Sobic010G143500--Sobic001G466800 Sobic010G143500--Sobic003G297800 Sobic008G189900 Sobic008G189900 Sobic010G143500--Sobic008G189900 Sobic010G143500--Sobic001G114400 Sobic010G143500--Sobic002G191100 Sobic010G143500--Sobic004G296000 Sobic010G176300--Sobic001G501300 Sobic003G212100 Sobic003G212100 Sobic010G176300--Sobic003G212100 Sobic001G276200 Sobic001G276200 Sobic010G176300--Sobic001G276200 Sobic010G176300--Sobic002G428800 Sobic010G176300--Sobic003G134000 Sobic010G176300--Sobic006G089400 Sobic001G070700 Sobic001G070700 Sobic010G176300--Sobic001G070700 Sobic004G318000 Sobic004G318000 Sobic010G176300--Sobic004G318000 Sobic010G176300--Sobic010G100800
Octagon: transcription factors


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