Gene annotation
Transcriptome id Sobic.003G134000.1,Sobic.003G134000.2
Synonym PPR596, Sb03g011400
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6Q2Y5
Pfam PF01535 PF13812
Panther DB PTHR24015 PTHR24015:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80270 : PENTATRICOPEPTIDE REPEAT 596
RAP-DB (Rice) LOC_Os12g07260.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a024171 , Zm00025a035187
Brachypodium -
Barley HORVU3Hr1G040710.4 , HORVU3Hr1G040710.1 , HORVU3Hr1G040710.3 , HORVU3Hr1G040710.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G134000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G031700 - -
2 Sobic.002G155000 EMB1381, putative, expressed -
3 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
4 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
6 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
7 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
9 Sobic.002G092050 - -
10 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
11 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
12 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
13 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
14 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
15 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
16 Sobic.010G176300 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
17 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
18 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
19 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
20 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase


Gene co-expression network
sample Sobic003G134000 Sobic003G134000 Sobic002G031700 Sobic002G031700 Sobic003G134000--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic003G134000--Sobic002G155000 Sobic006G058800 Sobic006G058800 Sobic003G134000--Sobic006G058800 Sobic007G075800 Sobic007G075800 Sobic003G134000--Sobic007G075800 Sobic002G428800 Sobic002G428800 Sobic003G134000--Sobic002G428800 Sobic010G100800 Sobic010G100800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic008G165900 Sobic008G165900 Sobic003G134000--Sobic008G165900 Sobic002G092050 Sobic002G092050 Sobic003G134000--Sobic002G092050 Sobic002G031700--Sobic007G075800 Sobic002G031700--Sobic002G155000 Sobic002G031700--Sobic010G100800 Sobic002G031700--Sobic008G165900 Sobic002G031700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic003G193200 Sobic003G193200 Sobic002G031700--Sobic003G193200 Sobic001G207200 Sobic001G207200 Sobic002G031700--Sobic001G207200 Sobic002G155000--Sobic007G075800 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic001G085800 Sobic001G085800 Sobic006G058800--Sobic001G085800 Sobic006G089400 Sobic006G089400 Sobic006G058800--Sobic006G089400 Sobic006G058800--Sobic003G134000 Sobic003G246000 Sobic003G246000 Sobic006G058800--Sobic003G246000 Sobic006G125900 Sobic006G125900 Sobic006G058800--Sobic006G125900 Sobic004G176000 Sobic004G176000 Sobic006G058800--Sobic004G176000 Sobic002G386600 Sobic002G386600 Sobic006G058800--Sobic002G386600 Sobic006G058800--Sobic002G092050 Sobic006G058800--Sobic007G097400 Sobic007G075800--Sobic002G031700 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic005G140500 Sobic005G140500 Sobic002G428800--Sobic005G140500 Sobic004G262700 Sobic004G262700 Sobic002G428800--Sobic004G262700 Sobic007G200900 Sobic007G200900 Sobic002G428800--Sobic007G200900 Sobic002G428800--Sobic001G501300 Sobic002G428800--Sobic003G134000 Sobic003G378400 Sobic003G378400 Sobic002G428800--Sobic003G378400 Sobic010G176300 Sobic010G176300 Sobic002G428800--Sobic010G176300 Sobic004G290000 Sobic004G290000 Sobic002G428800--Sobic004G290000 Sobic002G428800--Sobic010G100800 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic010G100800--Sobic003G193200 Sobic003G304400 Sobic003G304400 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic001G015400 Sobic001G015400 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400 Sobic001G224200 Sobic001G224200 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic008G165900--Sobic010G100800 Sobic008G165900--Sobic001G501300 Sobic008G165900--Sobic002G031700 Sobic002G378100 Sobic002G378100 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic002G092050--Sobic006G125900 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G092050--Sobic002G238000
Octagon: transcription factors


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