Gene annotation
Transcriptome id Sobic.006G089400.1
Synonym Sb06g017480
Functional annotation cleft lip and palate transmembrane protein 1, putative, expressed
UniProt C5Y8U8
Pfam PF05602
Panther DB PTHR21347 PTHR21347:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G08500 : Transmembrane CLPTM1 family protein
RAP-DB (Rice) LOC_Os04g36050.1 : cleft lip and palate transmembrane protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a056112 , Zm00025a011275
Brachypodium KQJ82779
Barley HORVU2Hr1G076910.2 , HORVU2Hr1G076910.1
Wheat TraesCS2B02G326300 , TraesCS2B02G326300 , TraesCS2A02G309200 , TraesCS2D02G307500 , TraesCS2D02G307500
Populus -


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cDNA sequences
Sobic.006G089400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
2 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
3 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
4 Sobic.010G143500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan water dikinase, chloroplast precursor, putative, expressed K08244: alpha-glucan, water dikinase
5 Sobic.007G029500 expressed protein -
6 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
7 Sobic.004G176000 "SDG725(Ortholog in rice:Sui et al., 2012)"(PubMedID : 31659884)@histone-lysine N-methyltransferase ASHH2, putative, expressed -
8 Sobic.001G207200 MEE12, putative, expressed -
9 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
10 Sobic.010G176300 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
11 Sobic.002G031700 - -
12 Sobic.003G297800 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
13 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
14 Sobic.006G207200 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
15 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G276200 ACI13, putative, expressed -
17 Sobic.002G298100 expressed protein -
18 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
19 Sobic.001G538800 dual specificity protein phosphatase, putative, expressed -
20 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -


Gene co-expression network
sample Sobic006G089400 Sobic006G089400 Sobic010G100800 Sobic010G100800 Sobic006G089400--Sobic010G100800 Sobic006G058800 Sobic006G058800 Sobic006G089400--Sobic006G058800 Sobic001G501300 Sobic001G501300 Sobic006G089400--Sobic001G501300 Sobic010G143500 Sobic010G143500 Sobic006G089400--Sobic010G143500 Sobic007G029500 Sobic007G029500 Sobic006G089400--Sobic007G029500 Sobic003G134000 Sobic003G134000 Sobic006G089400--Sobic003G134000 Sobic004G176000 Sobic004G176000 Sobic006G089400--Sobic004G176000 Sobic001G207200 Sobic001G207200 Sobic006G089400--Sobic001G207200 Sobic002G191100 Sobic002G191100 Sobic006G089400--Sobic002G191100 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic001G085800 Sobic001G085800 Sobic006G058800--Sobic001G085800 Sobic006G058800--Sobic006G089400 Sobic006G058800--Sobic003G134000 Sobic003G246000 Sobic003G246000 Sobic006G058800--Sobic003G246000 Sobic006G125900 Sobic006G125900 Sobic006G058800--Sobic006G125900 Sobic006G058800--Sobic004G176000 Sobic002G386600 Sobic002G386600 Sobic006G058800--Sobic002G386600 Sobic002G092050 Sobic002G092050 Sobic006G058800--Sobic002G092050 Sobic007G097400 Sobic007G097400 Sobic006G058800--Sobic007G097400 Sobic001G501300--Sobic010G100800 Sobic001G501300--Sobic001G207200 Sobic004G262700 Sobic004G262700 Sobic001G501300--Sobic004G262700 Sobic010G176300 Sobic010G176300 Sobic001G501300--Sobic010G176300 Sobic008G165900 Sobic008G165900 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic001G501300--Sobic005G026000 Sobic001G501300--Sobic003G193200 Sobic001G501300--Sobic002G031700 Sobic010G143500--Sobic006G089400 Sobic001G538800 Sobic001G538800 Sobic010G143500--Sobic001G538800 Sobic005G145300 Sobic005G145300 Sobic010G143500--Sobic005G145300 Sobic001G466800 Sobic001G466800 Sobic010G143500--Sobic001G466800 Sobic003G297800 Sobic003G297800 Sobic010G143500--Sobic003G297800 Sobic008G189900 Sobic008G189900 Sobic010G143500--Sobic008G189900 Sobic001G114400 Sobic001G114400 Sobic010G143500--Sobic001G114400 Sobic010G143500--Sobic002G191100 Sobic004G296000 Sobic004G296000 Sobic010G143500--Sobic004G296000 Sobic007G029500--Sobic001G501300 Sobic002G168500 Sobic002G168500 Sobic007G029500--Sobic002G168500 Sobic005G140500 Sobic005G140500 Sobic007G029500--Sobic005G140500 Sobic009G193500 Sobic009G193500 Sobic007G029500--Sobic009G193500 Sobic007G029500--Sobic006G089400 Sobic002G276100 Sobic002G276100 Sobic007G029500--Sobic002G276100 Sobic008G172300 Sobic008G172300 Sobic007G029500--Sobic008G172300 Sobic010G000600 Sobic010G000600 Sobic007G029500--Sobic010G000600 Sobic007G029500--Sobic010G100800 Sobic003G134000--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic003G134000--Sobic002G155000 Sobic003G134000--Sobic006G058800 Sobic007G075800 Sobic007G075800 Sobic003G134000--Sobic007G075800 Sobic002G428800 Sobic002G428800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic003G134000--Sobic008G165900 Sobic003G134000--Sobic002G092050 Sobic001G214600 Sobic001G214600 Sobic004G176000--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic004G176000--Sobic001G352900 Sobic004G176000--Sobic001G261900 Sobic010G053600 Sobic010G053600 Sobic004G176000--Sobic010G053600 Sobic004G023100 Sobic004G023100 Sobic004G176000--Sobic004G023100 Sobic004G260100 Sobic004G260100 Sobic004G176000--Sobic004G260100 Sobic001G493200 Sobic001G493200 Sobic004G176000--Sobic001G493200 Sobic006G210000 Sobic006G210000 Sobic004G176000--Sobic006G210000 Sobic007G212300 Sobic007G212300 Sobic004G176000--Sobic007G212300 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic003G332900 Sobic003G332900 Sobic001G207200--Sobic003G332900 Sobic001G224200 Sobic001G224200 Sobic001G207200--Sobic001G224200 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic003G039300 Sobic003G039300 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic004G070200 Sobic004G070200 Sobic002G191100--Sobic004G070200
Octagon: transcription factors


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