Gene annotation
Transcriptome id Sobic.004G176000.4,Sobic.004G176000.3,Sobic.004G176000.2,Sobic.004G176000.1
Synonym SDG8, EFS, ASHH2, Sb04g022620, CCR1
Functional annotation "SDG725(Ortholog in rice:Sui et al., 2012)" (PubMedID : 31659884)
histone-lysine N-methyltransferase ASHH2, putative, expressed
UniProt C5XU80
Pfam PF07496 PF00856
Panther DB PTHR22884 PTHR22884:SF276
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G77300 : histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)
RAP-DB (Rice) LOC_Os02g34850.1 : histone-lysine N-methyltransferase ASHH2, putative, expressed
MaizeGDB (Corn) Zm00025a020639
Brachypodium PNT68823 , PNT68826 , PNT68824 , PNT68825 , KQJ99871
Barley HORVU2Hr1G000940.15 , HORVU2Hr1G000940.14 , HORVU2Hr1G000940.17 , HORVU2Hr1G000940.16 , HORVU2Hr1G000940.11 , HORVU2Hr1G000940.10 , HORVU2Hr1G000940.13 , HORVU2Hr1G000940.18 , HORVU2Hr1G000940.1 , HORVU2Hr1G000940.3 , HORVU2Hr1G000940.2 , HORVU2Hr1G000940.5 , HORVU2Hr1G000940.7 , HORVU2Hr1G000940.6 , HORVU2Hr1G000940.9 , HORVU2Hr1G000940.8
Wheat TraesCS2B02G015500 , TraesCS2A02G005000 , TraesCS2D02G007100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G214600 expressed protein -
2 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
3 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
4 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
5 Sobic.004G023100 protein binding protein, putative, expressed -
6 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
7 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
8 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
9 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
10 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
11 Sobic.008G132900 expressed protein -
12 Sobic.010G001100 chromo domain containing protein, expressed -
13 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
15 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
16 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
17 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
18 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
19 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
20 Sobic.007G090430 - -


Gene co-expression network
sample Sobic004G176000 Sobic004G176000 Sobic001G214600 Sobic001G214600 Sobic004G176000--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic004G176000--Sobic001G352900 Sobic001G261900 Sobic001G261900 Sobic004G176000--Sobic001G261900 Sobic010G053600 Sobic010G053600 Sobic004G176000--Sobic010G053600 Sobic004G023100 Sobic004G023100 Sobic004G176000--Sobic004G023100 Sobic004G260100 Sobic004G260100 Sobic004G176000--Sobic004G260100 Sobic001G493200 Sobic001G493200 Sobic004G176000--Sobic001G493200 Sobic006G210000 Sobic006G210000 Sobic004G176000--Sobic006G210000 Sobic007G212300 Sobic007G212300 Sobic004G176000--Sobic007G212300 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G214600--Sobic001G493200 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200 Sobic010G100800 Sobic010G100800 Sobic001G261900--Sobic010G100800 Sobic001G261900--Sobic007G212300 Sobic004G107200 Sobic004G107200 Sobic001G261900--Sobic004G107200 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic004G351800 Sobic004G351800 Sobic001G261900--Sobic004G351800 Sobic007G000300 Sobic007G000300 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100 Sobic010G053600--Sobic001G352900 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic010G053600--Sobic004G242400 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G260100--Sobic004G023100 Sobic004G260100--Sobic010G053600 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic006G210000--Sobic010G001100 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic003G194500 Sobic003G194500 Sobic007G212300--Sobic003G194500 Sobic004G314000 Sobic004G314000 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic001G227400 Sobic001G227400 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic005G008800 Sobic005G008800 Sobic007G212300--Sobic005G008800 Sobic001G154900 Sobic001G154900 Sobic007G212300--Sobic001G154900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.