Gene annotation
Transcriptome id Sobic.002G031700.5,Sobic.002G031700.4,Sobic.002G031700.2,Sobic.002G031700.3,Sobic.002G031700.6,Sobic.002G031700.1
Synonym Sb02g002790, PMH2, ATRH53
Functional annotation -
UniProt A0A1W0W216 , A0A1W0W200 , A0A1W0W210 , C5X9H0 , A0A1W0W253
Pfam PF00271 PF00270 PF00270 PF00271
Panther DB PTHR24031 PTHR24031:SF326
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G22330 : putative mitochondrial RNA helicase 2
RAP-DB (Rice) LOC_Os07g05050.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a029052 , Zm00025a044997
Brachypodium KQK21026 , PNT77131 , PNT77132 , PNT77133
Barley HORVU2Hr1G060640.14 , HORVU2Hr1G060640.15 , HORVU2Hr1G060640.12 , HORVU2Hr1G060640.13 , HORVU2Hr1G060640.10 , HORVU2Hr1G060640.4 , HORVU2Hr1G060640.5 , HORVU2Hr1G060640.6 , HORVU2Hr1G060640.7 , HORVU2Hr1G060640.1 , HORVU2Hr1G060640.2 , HORVU2Hr1G060640.3 , HORVU2Hr1G060640.8 , HORVU2Hr1G060640.9
Wheat TraesCS2B02G273300 , TraesCS2D02G254200 , TraesCS2A02G253700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
2 Sobic.002G155000 EMB1381, putative, expressed -
3 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
4 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
5 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
7 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
8 Sobic.003G193200 expressed protein -
9 Sobic.001G207200 MEE12, putative, expressed -
10 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
11 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
12 Sobic.001G190400 endonuclease/Exonuclease/phosphatase family protein, expressed -
13 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
14 Sobic.002G431400 - -
15 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.002G122100 - -
17 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
18 Sobic.010G130300 OsMan07 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
19 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
20 Sobic.006G128400 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic002G031700 Sobic002G031700 Sobic007G075800 Sobic007G075800 Sobic002G031700--Sobic007G075800 Sobic002G155000 Sobic002G155000 Sobic002G031700--Sobic002G155000 Sobic010G100800 Sobic010G100800 Sobic002G031700--Sobic010G100800 Sobic008G165900 Sobic008G165900 Sobic002G031700--Sobic008G165900 Sobic003G134000 Sobic003G134000 Sobic002G031700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic003G193200 Sobic003G193200 Sobic002G031700--Sobic003G193200 Sobic001G207200 Sobic001G207200 Sobic002G031700--Sobic001G207200 Sobic007G075800--Sobic002G031700 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic007G075800--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic002G155000--Sobic007G075800 Sobic002G155000--Sobic002G031700 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic010G100800--Sobic003G193200 Sobic001G224200 Sobic001G224200 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic008G165900--Sobic010G100800 Sobic008G165900--Sobic001G501300 Sobic008G165900--Sobic002G031700 Sobic003G134000--Sobic002G031700 Sobic003G134000--Sobic002G155000 Sobic006G058800 Sobic006G058800 Sobic003G134000--Sobic006G058800 Sobic003G134000--Sobic007G075800 Sobic002G428800 Sobic002G428800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic003G134000--Sobic008G165900 Sobic002G092050 Sobic002G092050 Sobic003G134000--Sobic002G092050 Sobic001G501300--Sobic010G100800 Sobic001G501300--Sobic001G207200 Sobic004G262700 Sobic004G262700 Sobic001G501300--Sobic004G262700 Sobic010G176300 Sobic010G176300 Sobic001G501300--Sobic010G176300 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic001G501300--Sobic005G026000 Sobic001G501300--Sobic003G193200 Sobic001G501300--Sobic002G031700 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic007G097400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic007G097400--Sobic006G128400 Sobic006G125900 Sobic006G125900 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic002G339300 Sobic002G339300 Sobic003G193200--Sobic002G339300 Sobic002G418600 Sobic002G418600 Sobic003G193200--Sobic002G418600 Sobic006G119400 Sobic006G119400 Sobic003G193200--Sobic006G119400 Sobic003G193200--Sobic010G100800 Sobic009G052700 Sobic009G052700 Sobic003G193200--Sobic009G052700 Sobic003G193200--Sobic001G501300 Sobic003G193200--Sobic005G026000 Sobic001G124100 Sobic001G124100 Sobic003G193200--Sobic001G124100 Sobic003G193200--Sobic002G031700 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200
Octagon: transcription factors


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