Gene annotation
Transcriptome id Sobic.002G155000.2,Sobic.002G155000.1
Synonym Sb02g019440, emb1381
Functional annotation EMB1381, putative, expressed
UniProt C5X892
Pfam -
Panther DB PTHR36017 PTHR36017:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31340 : embryo defective 1381
RAP-DB (Rice) LOC_Os09g12500.2 : EMB1381, putative, expressed
MaizeGDB (Corn) Zm00025a046302
Brachypodium KQJ89742 , KQJ89743 , KQJ89741 , KQJ89744
Barley HORVU5Hr1G053980.8 , HORVU5Hr1G053980.9 , HORVU5Hr1G053980.6 , HORVU5Hr1G053980.7 , HORVU5Hr1G053980.4 , HORVU5Hr1G053980.5 , HORVU5Hr1G053980.2 , HORVU5Hr1G053980.3 , HORVU5Hr1G053980.13 , HORVU5Hr1G053980.14 , HORVU5Hr1G053980.15 , HORVU5Hr1G053980.16 , HORVU5Hr1G053980.17 , HORVU5Hr1G053980.10 , HORVU5Hr1G053980.11 , HORVU5Hr1G053980.12 , HORVU5Hr1G053980.18 , HORVU5Hr1G053980.19 , HORVU5Hr1G053980.21 , HORVU5Hr1G053980.20 , HORVU5Hr1G053980.22
Wheat TraesCS5D02G181800 , TraesCS5D02G181800 , TraesCS5B02G174700 , TraesCS5B02G174700 , TraesCS5A02G177500 , TraesCS5A02G177500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G155000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
2 Sobic.002G031700 - -
3 Sobic.006G128400 PPR repeat containing protein, expressed -
4 Sobic.002G317100 PPR repeat containing protein, expressed -
5 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
7 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
8 Sobic.001G393900 FAD binding domain containing protein, expressed -
9 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
10 Sobic.004G351800 PPR repeat containing protein, expressed -
11 Sobic.001G417500 expressed protein -
12 Sobic.010G130300 OsMan07 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
13 Sobic.001G466500 PPR repeat containing protein, expressed -
14 Sobic.001G190400 endonuclease/Exonuclease/phosphatase family protein, expressed -
15 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
16 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
17 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.007G030800 expressed protein -
19 Sobic.003G309050 - -
20 Sobic.004G356200 expressed protein -


Gene co-expression network
sample Sobic002G155000 Sobic002G155000 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic007G075800--Sobic002G031700 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic002G031700--Sobic007G075800 Sobic002G031700--Sobic002G155000 Sobic010G100800 Sobic010G100800 Sobic002G031700--Sobic010G100800 Sobic002G031700--Sobic008G165900 Sobic002G031700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic003G193200 Sobic003G193200 Sobic002G031700--Sobic003G193200 Sobic001G207200 Sobic001G207200 Sobic002G031700--Sobic001G207200 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic006G128400--Sobic002G317100 Sobic008G038600 Sobic008G038600 Sobic002G317100--Sobic008G038600 Sobic002G317100--Sobic006G128400 Sobic002G317100--Sobic001G393900 Sobic002G317100--Sobic002G155000 Sobic003G308500 Sobic003G308500 Sobic002G317100--Sobic003G308500 Sobic010G115400 Sobic010G115400 Sobic002G317100--Sobic010G115400 Sobic006G193300 Sobic006G193300 Sobic002G317100--Sobic006G193300 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300 Sobic003G134000--Sobic002G031700 Sobic003G134000--Sobic002G155000 Sobic006G058800 Sobic006G058800 Sobic003G134000--Sobic006G058800 Sobic003G134000--Sobic007G075800 Sobic002G428800 Sobic002G428800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic003G134000--Sobic008G165900 Sobic003G134000--Sobic002G092050 Sobic001G153300--Sobic008G038600 Sobic001G153300--Sobic006G269800 Sobic010G204900 Sobic010G204900 Sobic001G153300--Sobic010G204900 Sobic001G153300--Sobic002G155000 Sobic007G030800 Sobic007G030800 Sobic001G153300--Sobic007G030800 Sobic001G025800 Sobic001G025800 Sobic001G153300--Sobic001G025800 Sobic004G344000 Sobic004G344000 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic002G109600 Sobic002G109600 Sobic001G153300--Sobic002G109600 Sobic007G132200--Sobic008G038600 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic001G283300 Sobic001G283300 Sobic007G132200--Sobic001G283300 Sobic010G260000 Sobic010G260000 Sobic007G132200--Sobic010G260000 Sobic007G132200--Sobic001G025800 Sobic003G399100 Sobic003G399100 Sobic007G132200--Sobic003G399100 Sobic007G132200--Sobic010G204900 Sobic007G132200--Sobic006G049900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.