Gene annotation
Transcriptome id Sobic.007G030800.1
Synonym Sb07g002690, emb1974
Functional annotation expressed protein
UniProt Q8W0S6 , C5YMX1
Pfam PF01436
Panther DB PTHR24104 PTHR24104:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07060 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os08g04120.1 : expressed protein
MaizeGDB (Corn) Zm00025a011665 , Zm00025a030166 , Zm00025a009153
Brachypodium KQJ94977 , KQJ94976 , PNT66591 , PNT66592
Barley HORVU7Hr1G073520.30 , HORVU7Hr1G073520.31 , HORVU7Hr1G073520.32 , HORVU7Hr1G073520.33 , HORVU7Hr1G073520.34 , HORVU7Hr1G073520.35 , HORVU7Hr1G073520.36 , HORVU7Hr1G073520.37 , HORVU7Hr1G073520.38 , HORVU7Hr1G073520.39 , HORVU7Hr1G073520.19 , HORVU7Hr1G073520.12 , HORVU7Hr1G073520.13 , HORVU7Hr1G073520.10 , HORVU7Hr1G073520.11 , HORVU7Hr1G073520.16 , HORVU7Hr1G073520.17 , HORVU7Hr1G073520.14 , HORVU7Hr1G073520.15 , HORVU7Hr1G073520.1 , HORVU7Hr1G073520.2 , HORVU7Hr1G073520.3 , HORVU7Hr1G073520.4 , HORVU7Hr1G073520.5 , HORVU7Hr1G073520.6 , HORVU7Hr1G073520.8 , HORVU7Hr1G073520.9 , HORVU7Hr1G073520.40 , HORVU7Hr1G073520.23 , HORVU7Hr1G073520.22 , HORVU7Hr1G073520.21 , HORVU7Hr1G073520.20 , HORVU7Hr1G073520.27 , HORVU7Hr1G073520.26 , HORVU7Hr1G073520.25 , HORVU7Hr1G073520.24 , HORVU7Hr1G073520.29
Wheat TraesCS7D02G305700 , TraesCS7A02G309000 , TraesCS7B02G209000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
2 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
3 Sobic.002G155000 EMB1381, putative, expressed -
4 Sobic.002G317100 PPR repeat containing protein, expressed -
5 Sobic.007G211800 kinase, pfkB family, putative, expressed -
6 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
7 Sobic.001G417500 expressed protein -
8 Sobic.006G249500 expressed protein K16914: RIOX1, bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66
9 Sobic.004G351800 PPR repeat containing protein, expressed -
10 Sobic.010G130300 OsMan07 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
11 Sobic.004G019500 pentatricopeptide, putative, expressed -
12 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
13 Sobic.004G356200 expressed protein -
14 Sobic.003G188300 expressed protein -
15 Sobic.001G402500 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
16 Sobic.002G170200 zinc finger family protein, putative, expressed -
17 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
18 Sobic.003G399100 pentatricopeptide, putative, expressed -
19 Sobic.004G344000 expressed protein -
20 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic007G030800 Sobic007G030800 Sobic001G153300 Sobic001G153300 Sobic007G030800--Sobic001G153300 Sobic006G269800 Sobic006G269800 Sobic007G030800--Sobic006G269800 Sobic002G155000 Sobic002G155000 Sobic007G030800--Sobic002G155000 Sobic002G317100 Sobic002G317100 Sobic007G030800--Sobic002G317100 Sobic007G211800 Sobic007G211800 Sobic007G030800--Sobic007G211800 Sobic008G038600 Sobic008G038600 Sobic007G030800--Sobic008G038600 Sobic001G417500 Sobic001G417500 Sobic007G030800--Sobic001G417500 Sobic006G249500 Sobic006G249500 Sobic007G030800--Sobic006G249500 Sobic004G351800 Sobic004G351800 Sobic007G030800--Sobic004G351800 Sobic001G153300--Sobic008G038600 Sobic001G153300--Sobic006G269800 Sobic010G204900 Sobic010G204900 Sobic001G153300--Sobic010G204900 Sobic001G153300--Sobic002G155000 Sobic001G153300--Sobic007G030800 Sobic001G025800 Sobic001G025800 Sobic001G153300--Sobic001G025800 Sobic004G344000 Sobic004G344000 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic002G109600 Sobic002G109600 Sobic001G153300--Sobic002G109600 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic002G155000--Sobic001G393900 Sobic002G155000--Sobic006G269800 Sobic002G317100--Sobic008G038600 Sobic002G317100--Sobic006G128400 Sobic002G317100--Sobic001G393900 Sobic002G317100--Sobic002G155000 Sobic003G308500 Sobic003G308500 Sobic002G317100--Sobic003G308500 Sobic010G115400 Sobic010G115400 Sobic002G317100--Sobic010G115400 Sobic006G193300 Sobic006G193300 Sobic002G317100--Sobic006G193300 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300 Sobic001G032200 Sobic001G032200 Sobic007G211800--Sobic001G032200 Sobic008G011300 Sobic008G011300 Sobic007G211800--Sobic008G011300 Sobic007G211800--Sobic001G025800 Sobic007G211800--Sobic010G204900 Sobic001G495400 Sobic001G495400 Sobic007G211800--Sobic001G495400 Sobic007G211800--Sobic007G030800 Sobic008G097600 Sobic008G097600 Sobic007G211800--Sobic008G097600 Sobic010G221600 Sobic010G221600 Sobic007G211800--Sobic010G221600 Sobic007G090537 Sobic007G090537 Sobic007G211800--Sobic007G090537 Sobic008G038600--Sobic002G317100 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic008G038600--Sobic007G132200 Sobic008G038600--Sobic001G153300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic001G417500--Sobic006G269800 Sobic001G417500--Sobic004G351800 Sobic003G309050 Sobic003G309050 Sobic001G417500--Sobic003G309050 Sobic001G417500--Sobic002G043100 Sobic001G417500--Sobic001G393900 Sobic001G417500--Sobic008G017100 Sobic001G417500--Sobic004G107200 Sobic007G173500 Sobic007G173500 Sobic001G417500--Sobic007G173500 Sobic007G000300 Sobic007G000300 Sobic001G417500--Sobic007G000300 Sobic006G249500--Sobic010G115400 Sobic006G249500--Sobic008G147200 Sobic006G249500--Sobic003G308500 Sobic006G249500--Sobic006G269800 Sobic001G089600 Sobic001G089600 Sobic006G249500--Sobic001G089600 Sobic006G249500--Sobic003G052800 Sobic010G096000 Sobic010G096000 Sobic006G249500--Sobic010G096000 Sobic003G413100 Sobic003G413100 Sobic006G249500--Sobic003G413100 Sobic006G249500--Sobic007G030800 Sobic004G351800--Sobic001G417500 Sobic004G351800--Sobic008G017100 Sobic001G261900 Sobic001G261900 Sobic004G351800--Sobic001G261900 Sobic004G351800--Sobic006G269800 Sobic004G351800--Sobic004G107200 Sobic002G052400 Sobic002G052400 Sobic004G351800--Sobic002G052400 Sobic001G326300 Sobic001G326300 Sobic004G351800--Sobic001G326300 Sobic004G351800--Sobic007G173500 Sobic004G351800--Sobic006G128400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.