Gene annotation
Transcriptome id Sobic.007G132200.1
Synonym Sb07g020840, ATRAD4, RAD4
Functional annotation DNA-repair protein complementing XP-C cells, putative, expressed
UniProt C5YL31
Pfam PF10404 PF10403 PF10405 PF03835
Panther DB PTHR12135 PTHR12135:SF0
NCBI CDD KOG2179; Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11
KEGG Orthology K10838; xeroderma pigmentosum group C-complementing protein
Gene Ontology GO:0003677; DNA binding GO:0006289nucleotide-excision repair GO:0005634nucleus GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT5G16630 : DNA repair protein Rad4 family
RAP-DB (Rice) LOC_Os08g33082.1 : DNA-repair protein complementing XP-C cells, putative, expressed
MaizeGDB (Corn) Zm00025a005987
Brachypodium PNT68125 , KQJ98334
Barley HORVU7Hr1G043410.9 , HORVU7Hr1G043410.8 , HORVU7Hr1G043410.7 , HORVU7Hr1G043410.6 , HORVU7Hr1G043410.5 , HORVU7Hr1G043410.4 , HORVU7Hr1G043410.3 , HORVU7Hr1G043410.2 , HORVU7Hr1G043410.20 , HORVU7Hr1G043410.21 , HORVU7Hr1G043410.17 , HORVU7Hr1G043410.16 , HORVU7Hr1G043410.15 , HORVU7Hr1G043410.14 , HORVU7Hr1G043410.13 , HORVU7Hr1G043410.12 , HORVU7Hr1G043410.11 , HORVU7Hr1G043410.10 , HORVU7Hr1G043410.19 , HORVU7Hr1G043410.18
Wheat TraesCS7A02G214200 , TraesCS7A02G214200 , TraesCS7A02G214200 , TraesCS7B02G121500 , TraesCS7D02G216500 , TraesCS7D02G216500 , TraesCS7D02G216500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
2 Sobic.002G155000 EMB1381, putative, expressed -
3 Sobic.001G290600 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.001G283300 PPR repeat domain containing protein, putative, expressed -
5 Sobic.010G260000 pentatricopeptide, putative, expressed -
6 Sobic.001G025800 pentatricopeptide, putative, expressed -
7 Sobic.003G399100 pentatricopeptide, putative, expressed -
8 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
9 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
10 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
11 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
12 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.001G393900 FAD binding domain containing protein, expressed -
14 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
15 Sobic.007G210000 ribosomal L18p/L5e family protein, expressed -
16 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
17 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
18 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
19 Sobic.006G125500 expressed protein -
20 Sobic.002G431400 - -


Gene co-expression network
sample Sobic007G132200 Sobic007G132200 Sobic008G038600 Sobic008G038600 Sobic007G132200--Sobic008G038600 Sobic002G155000 Sobic002G155000 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic001G283300 Sobic001G283300 Sobic007G132200--Sobic001G283300 Sobic010G260000 Sobic010G260000 Sobic007G132200--Sobic010G260000 Sobic001G025800 Sobic001G025800 Sobic007G132200--Sobic001G025800 Sobic003G399100 Sobic003G399100 Sobic007G132200--Sobic003G399100 Sobic010G204900 Sobic010G204900 Sobic007G132200--Sobic010G204900 Sobic006G049900 Sobic006G049900 Sobic007G132200--Sobic006G049900 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic008G038600--Sobic003G399100 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic002G155000--Sobic006G128400 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic002G155000--Sobic001G153300 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic001G290600--Sobic007G132200 Sobic003G418200 Sobic003G418200 Sobic001G290600--Sobic003G418200 Sobic008G097600 Sobic008G097600 Sobic001G290600--Sobic008G097600 Sobic003G309300 Sobic003G309300 Sobic001G290600--Sobic003G309300 Sobic001G290600--Sobic001G283300 Sobic001G434700 Sobic001G434700 Sobic001G290600--Sobic001G434700 Sobic007G100500 Sobic007G100500 Sobic001G290600--Sobic007G100500 Sobic003G252700 Sobic003G252700 Sobic001G290600--Sobic003G252700 Sobic010G130300 Sobic010G130300 Sobic001G290600--Sobic010G130300 Sobic001G283300--Sobic007G132200 Sobic006G125500 Sobic006G125500 Sobic001G283300--Sobic006G125500 Sobic001G283300--Sobic007G075800 Sobic001G283300--Sobic002G155000 Sobic001G283300--Sobic006G128400 Sobic002G043100 Sobic002G043100 Sobic001G283300--Sobic002G043100 Sobic001G283300--Sobic002G317100 Sobic001G283300--Sobic010G260000 Sobic001G283300--Sobic003G399100 Sobic003G033100 Sobic003G033100 Sobic010G260000--Sobic003G033100 Sobic010G260000--Sobic007G132200 Sobic010G051700 Sobic010G051700 Sobic010G260000--Sobic010G051700 Sobic004G025800 Sobic004G025800 Sobic010G260000--Sobic004G025800 Sobic001G172700 Sobic001G172700 Sobic010G260000--Sobic001G172700 Sobic009G185700 Sobic009G185700 Sobic010G260000--Sobic009G185700 Sobic003G101700 Sobic003G101700 Sobic010G260000--Sobic003G101700 Sobic006G137600 Sobic006G137600 Sobic010G260000--Sobic006G137600 Sobic002G399800 Sobic002G399800 Sobic010G260000--Sobic002G399800 Sobic001G025800--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic001G025800--Sobic005G117300 Sobic001G495200 Sobic001G495200 Sobic001G025800--Sobic001G495200 Sobic002G048200 Sobic002G048200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic003G267500 Sobic003G267500 Sobic001G025800--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic003G399100--Sobic008G038600 Sobic004G354000 Sobic004G354000 Sobic003G399100--Sobic004G354000 Sobic009G005400 Sobic009G005400 Sobic003G399100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic003G399100--Sobic002G305100 Sobic003G399100--Sobic007G132200 Sobic003G399100--Sobic003G267500 Sobic003G399100--Sobic006G128400 Sobic008G017100 Sobic008G017100 Sobic003G399100--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic003G399100--Sobic010G224700 Sobic001G032200 Sobic001G032200 Sobic010G204900--Sobic001G032200 Sobic010G204900--Sobic001G025800 Sobic010G204900--Sobic003G267500 Sobic010G100800 Sobic010G100800 Sobic010G204900--Sobic010G100800 Sobic003G120300 Sobic003G120300 Sobic010G204900--Sobic003G120300 Sobic004G130300 Sobic004G130300 Sobic010G204900--Sobic004G130300 Sobic001G250700 Sobic001G250700 Sobic010G204900--Sobic001G250700 Sobic010G204900--Sobic004G003900 Sobic010G204900--Sobic005G117300 Sobic006G049900--Sobic002G399800 Sobic010G079500 Sobic010G079500 Sobic006G049900--Sobic010G079500 Sobic002G316600 Sobic002G316600 Sobic006G049900--Sobic002G316600 Sobic003G260400 Sobic003G260400 Sobic006G049900--Sobic003G260400 Sobic006G119400 Sobic006G119400 Sobic006G049900--Sobic006G119400 Sobic004G276400 Sobic004G276400 Sobic006G049900--Sobic004G276400 Sobic005G122700 Sobic005G122700 Sobic006G049900--Sobic005G122700 Sobic003G441900 Sobic003G441900 Sobic006G049900--Sobic003G441900 Sobic001G004400 Sobic001G004400 Sobic006G049900--Sobic001G004400
Octagon: transcription factors


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