Gene annotation
Transcriptome id Sobic.010G260000.2,Sobic.010G260000.3,Sobic.010G260000.5,Sobic.010G260000.4
Synonym Sb10g029640
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0VUX6 , A0A1W0VUV0
Pfam PF13812 PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF483
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42310 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os06g49670.2,LOC_Os06g49670.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009984 , Zm00025a001630 , Zm00025a018447
Brachypodium -
Barley HORVU0Hr1G007320.3 , HORVU0Hr1G007320.4 , HORVU0Hr1G007320.5
Wheat TraesCS7A02G407400 , TraesCS7D02G400900 , TraesCS7D02G400900 , TraesCS7D02G400900 , TraesCS7B02G307500 , TraesCS7B02G307500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G033100 RNA methyltransferase protein, putative, expressed -
2 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
3 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
4 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
5 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
7 Sobic.003G101700 dnaJ domain containing protein, expressed -
8 Sobic.006G137600 AT hook motif family protein, expressed -
9 Sobic.002G399800 PWWP domain containing protein, expressed -
10 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
11 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
12 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.001G283300 PPR repeat domain containing protein, putative, expressed -
14 Sobic.004G134200 GTP binding protein, putative, expressed -
15 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
16 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
17 Sobic.001G417500 expressed protein -
18 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
19 Sobic.006G128400 PPR repeat containing protein, expressed -
20 Sobic.007G100500 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G260000 Sobic010G260000 Sobic003G033100 Sobic003G033100 Sobic010G260000--Sobic003G033100 Sobic007G132200 Sobic007G132200 Sobic010G260000--Sobic007G132200 Sobic010G051700 Sobic010G051700 Sobic010G260000--Sobic010G051700 Sobic004G025800 Sobic004G025800 Sobic010G260000--Sobic004G025800 Sobic001G172700 Sobic001G172700 Sobic010G260000--Sobic001G172700 Sobic009G185700 Sobic009G185700 Sobic010G260000--Sobic009G185700 Sobic003G101700 Sobic003G101700 Sobic010G260000--Sobic003G101700 Sobic006G137600 Sobic006G137600 Sobic010G260000--Sobic006G137600 Sobic002G399800 Sobic002G399800 Sobic010G260000--Sobic002G399800 Sobic002G043600 Sobic002G043600 Sobic003G033100--Sobic002G043600 Sobic005G084500 Sobic005G084500 Sobic003G033100--Sobic005G084500 Sobic003G033100--Sobic004G025800 Sobic003G033100--Sobic010G051700 Sobic002G181000 Sobic002G181000 Sobic003G033100--Sobic002G181000 Sobic007G005400 Sobic007G005400 Sobic003G033100--Sobic007G005400 Sobic003G234900 Sobic003G234900 Sobic003G033100--Sobic003G234900 Sobic005G142800 Sobic005G142800 Sobic003G033100--Sobic005G142800 Sobic006G049900 Sobic006G049900 Sobic003G033100--Sobic006G049900 Sobic008G038600 Sobic008G038600 Sobic007G132200--Sobic008G038600 Sobic002G155000 Sobic002G155000 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic001G283300 Sobic001G283300 Sobic007G132200--Sobic001G283300 Sobic007G132200--Sobic010G260000 Sobic001G025800 Sobic001G025800 Sobic007G132200--Sobic001G025800 Sobic003G399100 Sobic003G399100 Sobic007G132200--Sobic003G399100 Sobic010G204900 Sobic010G204900 Sobic007G132200--Sobic010G204900 Sobic007G132200--Sobic006G049900 Sobic010G051700--Sobic003G033100 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic004G025800--Sobic010G051700 Sobic004G025800--Sobic001G172700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic004G025800--Sobic005G142800 Sobic004G134200 Sobic004G134200 Sobic001G172700--Sobic004G134200 Sobic009G215500 Sobic009G215500 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic001G172700--Sobic006G137600 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic001G172700--Sobic005G142800 Sobic001G172700--Sobic010G051700 Sobic001G455600 Sobic001G455600 Sobic009G185700--Sobic001G455600 Sobic002G344000 Sobic002G344000 Sobic009G185700--Sobic002G344000 Sobic009G185700--Sobic004G134200 Sobic002G425500 Sobic002G425500 Sobic009G185700--Sobic002G425500 Sobic003G441900 Sobic003G441900 Sobic009G185700--Sobic003G441900 Sobic009G185700--Sobic005G142800 Sobic002G211800 Sobic002G211800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G185700--Sobic009G215500 Sobic002G316600 Sobic002G316600 Sobic003G101700--Sobic002G316600 Sobic010G079500 Sobic010G079500 Sobic003G101700--Sobic010G079500 Sobic002G308700 Sobic002G308700 Sobic003G101700--Sobic002G308700 Sobic003G260400 Sobic003G260400 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic001G230000 Sobic001G230000 Sobic003G101700--Sobic001G230000 Sobic008G054000 Sobic008G054000 Sobic003G101700--Sobic008G054000 Sobic003G101700--Sobic004G134200 Sobic004G334300 Sobic004G334300 Sobic003G101700--Sobic004G334300 Sobic006G137600--Sobic010G053600 Sobic001G020000 Sobic001G020000 Sobic006G137600--Sobic001G020000 Sobic001G352900 Sobic001G352900 Sobic006G137600--Sobic001G352900 Sobic009G142000 Sobic009G142000 Sobic006G137600--Sobic009G142000 Sobic006G137600--Sobic001G172700 Sobic007G171100 Sobic007G171100 Sobic006G137600--Sobic007G171100 Sobic001G451300 Sobic001G451300 Sobic006G137600--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic006G137600--Sobic002G412700 Sobic002G043100 Sobic002G043100 Sobic006G137600--Sobic002G043100 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200
Octagon: transcription factors


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