Gene annotation
Transcriptome id Sobic.007G100500.1
Synonym Sb07g011860
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5YK11
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF618
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80880 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g17080.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a030599
Brachypodium KQJ95874
Barley HORVU1Hr1G059490.8 , HORVU1Hr1G059490.2 , HORVU1Hr1G059490.3 , HORVU1Hr1G059490.1
Wheat TraesCS1A02G226100 , TraesCS1D02G227500 , TraesCS1B02G240200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.006G026250 - -
3 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
4 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.003G418200 spermatogenesis-associated protein 20 precursor, putative, expressed -
6 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
7 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
8 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
9 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
10 Sobic.003G433300 DNA mismatch repair protein Mlh1, putative, expressed K08734: DNA mismatch repair protein MLH1
11 Sobic.004G079800 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
12 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
13 Sobic.004G213800 expressed protein -
14 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
15 Sobic.003G433200 BAS1, putative, expressed -
16 Sobic.002G424900 MAG2, putative, expressed -
17 Sobic.010G260000 pentatricopeptide, putative, expressed -
18 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
19 Sobic.001G288700 armadillo/beta-catenin-like repeat containing protein, expressed -
20 Sobic.001G254600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic007G100500 Sobic007G100500 Sobic003G120300 Sobic003G120300 Sobic007G100500--Sobic003G120300 Sobic006G026250 Sobic006G026250 Sobic007G100500--Sobic006G026250 Sobic006G128300 Sobic006G128300 Sobic007G100500--Sobic006G128300 Sobic007G075800 Sobic007G075800 Sobic007G100500--Sobic007G075800 Sobic003G418200 Sobic003G418200 Sobic007G100500--Sobic003G418200 Sobic001G333500 Sobic001G333500 Sobic007G100500--Sobic001G333500 Sobic003G308500 Sobic003G308500 Sobic007G100500--Sobic003G308500 Sobic006G038500 Sobic006G038500 Sobic007G100500--Sobic006G038500 Sobic007G132200 Sobic007G132200 Sobic007G100500--Sobic007G132200 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic002G425500 Sobic002G425500 Sobic003G120300--Sobic002G425500 Sobic006G026250--Sobic003G308500 Sobic001G340000 Sobic001G340000 Sobic006G026250--Sobic001G340000 Sobic009G255700 Sobic009G255700 Sobic006G026250--Sobic009G255700 Sobic003G296900 Sobic003G296900 Sobic006G026250--Sobic003G296900 Sobic003G441900 Sobic003G441900 Sobic006G026250--Sobic003G441900 Sobic001G065100 Sobic001G065100 Sobic006G026250--Sobic001G065100 Sobic006G026250--Sobic003G120300 Sobic003G095900 Sobic003G095900 Sobic006G026250--Sobic003G095900 Sobic006G125500 Sobic006G125500 Sobic006G026250--Sobic006G125500 Sobic002G218500 Sobic002G218500 Sobic006G128300--Sobic002G218500 Sobic004G079800 Sobic004G079800 Sobic006G128300--Sobic004G079800 Sobic006G128300--Sobic006G038500 Sobic002G431300 Sobic002G431300 Sobic006G128300--Sobic002G431300 Sobic002G347600 Sobic002G347600 Sobic006G128300--Sobic002G347600 Sobic002G042500 Sobic002G042500 Sobic006G128300--Sobic002G042500 Sobic008G001900 Sobic008G001900 Sobic006G128300--Sobic008G001900 Sobic001G126300 Sobic001G126300 Sobic006G128300--Sobic001G126300 Sobic006G031800 Sobic006G031800 Sobic006G128300--Sobic006G031800 Sobic002G031700 Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic001G254600 Sobic001G254600 Sobic003G418200--Sobic001G254600 Sobic006G030100 Sobic006G030100 Sobic003G418200--Sobic006G030100 Sobic003G418200--Sobic007G100500 Sobic003G404000 Sobic003G404000 Sobic003G418200--Sobic003G404000 Sobic001G290600 Sobic001G290600 Sobic003G418200--Sobic001G290600 Sobic010G155600 Sobic010G155600 Sobic003G418200--Sobic010G155600 Sobic003G433300 Sobic003G433300 Sobic003G418200--Sobic003G433300 Sobic001G283300 Sobic001G283300 Sobic003G418200--Sobic001G283300 Sobic002G366300 Sobic002G366300 Sobic003G418200--Sobic002G366300 Sobic004G337400 Sobic004G337400 Sobic001G333500--Sobic004G337400 Sobic002G193800 Sobic002G193800 Sobic001G333500--Sobic002G193800 Sobic003G219200 Sobic003G219200 Sobic001G333500--Sobic003G219200 Sobic004G069000 Sobic004G069000 Sobic001G333500--Sobic004G069000 Sobic005G199400 Sobic005G199400 Sobic001G333500--Sobic005G199400 Sobic001G194300 Sobic001G194300 Sobic001G333500--Sobic001G194300 Sobic006G102000 Sobic006G102000 Sobic001G333500--Sobic006G102000 SobicK031800 SobicK031800 Sobic001G333500--SobicK031800 Sobic004G238200 Sobic004G238200 Sobic001G333500--Sobic004G238200 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic006G038500--Sobic002G347600 Sobic001G465700 Sobic001G465700 Sobic006G038500--Sobic001G465700 Sobic004G120100 Sobic004G120100 Sobic006G038500--Sobic004G120100 Sobic006G038500--Sobic001G126300 Sobic003G141100 Sobic003G141100 Sobic006G038500--Sobic003G141100 Sobic006G038500--Sobic006G128300 Sobic001G516901 Sobic001G516901 Sobic006G038500--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic006G038500--Sobic003G232700 Sobic003G160800 Sobic003G160800 Sobic006G038500--Sobic003G160800 Sobic008G038600 Sobic008G038600 Sobic007G132200--Sobic008G038600 Sobic007G132200--Sobic002G155000 Sobic007G132200--Sobic001G290600 Sobic007G132200--Sobic001G283300 Sobic010G260000 Sobic010G260000 Sobic007G132200--Sobic010G260000 Sobic001G025800 Sobic001G025800 Sobic007G132200--Sobic001G025800 Sobic003G399100 Sobic003G399100 Sobic007G132200--Sobic003G399100 Sobic010G204900 Sobic010G204900 Sobic007G132200--Sobic010G204900 Sobic007G132200--Sobic006G049900
Octagon: transcription factors


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