Gene annotation
Transcriptome id Sobic.001G288700.4,Sobic.001G288700.6,Sobic.001G288700.1,Sobic.001G288700.5
Synonym Sb01g028300
Functional annotation armadillo/beta-catenin-like repeat containing protein, expressed
UniProt C5WRB9
Pfam PF00514
Panther DB PTHR23315
NCBI CDD KOG4646; Uncharacterized conserved protein, contains ARM repeats
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G37290 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os11g34364.1 : armadillo/beta-catenin-like repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a032493
Brachypodium KQK20347
Barley HORVU1Hr1G050380.21 , HORVU1Hr1G050380.22 , HORVU1Hr1G050380.24 , HORVU1Hr1G050380.3 , HORVU1Hr1G050380.2 , HORVU1Hr1G050380.4 , HORVU1Hr1G050380.7 , HORVU1Hr1G050380.6 , HORVU1Hr1G050380.16 , HORVU1Hr1G050380.11 , HORVU1Hr1G050380.10 , HORVU1Hr1G050380.13
Wheat TraesCS1B02G207500 , TraesCS1D02G195900 , TraesCS1A02G192500
Populus -


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cDNA sequences
Sobic.001G288700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G433200 BAS1, putative, expressed -
2 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
3 Sobic.004G244900 expressed protein -
4 Sobic.004G185800 expressed protein -
5 Sobic.004G263400 expressed protein -
6 Sobic.006G216100 expressed protein -
7 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
8 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
9 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.004G334300 ATMAK10, putative, expressed -
11 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
12 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
13 Sobic.003G168100 BZIP protein, putative, expressed -
14 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
15 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
16 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
17 Sobic.010G123600 WW domain containing protein, expressed -
18 Sobic.001G286500 expressed protein -
19 Sobic.003G032700 - -
20 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -


Gene co-expression network
sample Sobic001G288700 Sobic001G288700 Sobic003G433200 Sobic003G433200 Sobic001G288700--Sobic003G433200 Sobic009G255700 Sobic009G255700 Sobic001G288700--Sobic009G255700 Sobic004G244900 Sobic004G244900 Sobic001G288700--Sobic004G244900 Sobic004G185800 Sobic004G185800 Sobic001G288700--Sobic004G185800 Sobic004G263400 Sobic004G263400 Sobic001G288700--Sobic004G263400 Sobic006G216100 Sobic006G216100 Sobic001G288700--Sobic006G216100 Sobic001G145000 Sobic001G145000 Sobic001G288700--Sobic001G145000 Sobic006G093300 Sobic006G093300 Sobic001G288700--Sobic006G093300 Sobic001G192000 Sobic001G192000 Sobic001G288700--Sobic001G192000 Sobic003G433200--Sobic001G288700 Sobic010G239900 Sobic010G239900 Sobic003G433200--Sobic010G239900 Sobic003G433200--Sobic009G255700 Sobic003G433200--Sobic004G244900 Sobic003G433200--Sobic001G145000 Sobic003G433200--Sobic004G185800 Sobic003G119600 Sobic003G119600 Sobic003G433200--Sobic003G119600 Sobic007G031900 Sobic007G031900 Sobic003G433200--Sobic007G031900 Sobic009G185700 Sobic009G185700 Sobic003G433200--Sobic009G185700 Sobic009G255700--Sobic001G192000 Sobic008G088872 Sobic008G088872 Sobic009G255700--Sobic008G088872 Sobic002G275700 Sobic002G275700 Sobic009G255700--Sobic002G275700 Sobic001G370900 Sobic001G370900 Sobic009G255700--Sobic001G370900 Sobic005G162500 Sobic005G162500 Sobic009G255700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic009G255700--Sobic006G184900 Sobic002G308700 Sobic002G308700 Sobic009G255700--Sobic002G308700 Sobic002G335600 Sobic002G335600 Sobic009G255700--Sobic002G335600 Sobic009G255700--Sobic004G244900 Sobic001G457800 Sobic001G457800 Sobic004G244900--Sobic001G457800 Sobic004G334300 Sobic004G334300 Sobic004G244900--Sobic004G334300 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic006G041600 Sobic006G041600 Sobic004G185800--Sobic006G041600 Sobic001G433800 Sobic001G433800 Sobic004G185800--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic004G185800--Sobic003G398700 Sobic003G188400 Sobic003G188400 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic006G096900 Sobic006G096900 Sobic004G185800--Sobic006G096900 Sobic006G252900 Sobic006G252900 Sobic004G185800--Sobic006G252900 Sobic004G185800--Sobic003G168100 Sobic002G425500 Sobic002G425500 Sobic004G185800--Sobic002G425500 Sobic004G263400--Sobic004G244900 Sobic004G263400--Sobic001G145000 Sobic001G465700 Sobic001G465700 Sobic004G263400--Sobic001G465700 Sobic004G263400--Sobic001G288700 Sobic004G026500 Sobic004G026500 Sobic004G263400--Sobic004G026500 Sobic002G321901 Sobic002G321901 Sobic004G263400--Sobic002G321901 Sobic003G340600 Sobic003G340600 Sobic004G263400--Sobic003G340600 Sobic006G050000 Sobic006G050000 Sobic004G263400--Sobic006G050000 Sobic001G300100 Sobic001G300100 Sobic004G263400--Sobic001G300100 Sobic004G034800 Sobic004G034800 Sobic006G216100--Sobic004G034800 Sobic002G042800 Sobic002G042800 Sobic006G216100--Sobic002G042800 Sobic006G216100--Sobic003G168100 Sobic001G455600 Sobic001G455600 Sobic006G216100--Sobic001G455600 Sobic006G216100--Sobic006G252900 Sobic009G132700 Sobic009G132700 Sobic006G216100--Sobic009G132700 Sobic006G216100--Sobic007G031900 Sobic006G216100--Sobic003G398700 Sobic006G216100--Sobic004G244900 Sobic002G424700 Sobic002G424700 Sobic001G145000--Sobic002G424700 Sobic001G145000--Sobic004G334300 Sobic001G145000--Sobic002G275700 Sobic001G145000--Sobic004G244900 Sobic005G142800 Sobic005G142800 Sobic001G145000--Sobic005G142800 Sobic007G103100 Sobic007G103100 Sobic001G145000--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic001G145000--Sobic001G527800 Sobic010G123600 Sobic010G123600 Sobic001G145000--Sobic010G123600 Sobic002G316600 Sobic002G316600 Sobic001G145000--Sobic002G316600 Sobic006G039400 Sobic006G039400 Sobic006G093300--Sobic006G039400 Sobic001G434200 Sobic001G434200 Sobic006G093300--Sobic001G434200 Sobic008G185800 Sobic008G185800 Sobic006G093300--Sobic008G185800 Sobic003G241700 Sobic003G241700 Sobic006G093300--Sobic003G241700 Sobic001G283600 Sobic001G283600 Sobic006G093300--Sobic001G283600 Sobic001G333100 Sobic001G333100 Sobic006G093300--Sobic001G333100 Sobic003G308500 Sobic003G308500 Sobic006G093300--Sobic003G308500 Sobic003G296900 Sobic003G296900 Sobic006G093300--Sobic003G296900 Sobic006G093300--Sobic006G184900 Sobic001G192000--Sobic002G275700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic001G192000--Sobic008G088872 Sobic001G192000--Sobic001G333100 Sobic003G195000 Sobic003G195000 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400
Octagon: transcription factors


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