Gene annotation
Transcriptome id Sobic.009G107300.1
Synonym Sb09g017250
Functional annotation 3\'-5\' exonuclease, putative, expressed
UniProt C5YWP4
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF15
NCBI CDD KOG2207; Predicted 3'-5' exonuclease
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G56310 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os05g28860.1 : 3\'-5\' exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a037124
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
2 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
3 Sobic.004G240400 tRNA synthetase, putative, expressed -
4 Sobic.008G116700 expressed protein -
5 Sobic.003G043000 expressed protein -
6 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
7 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
8 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
9 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H
11 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
12 Sobic.003G241700 SET domain containing protein, expressed -
13 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
14 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
15 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
16 Sobic.002G063900 zinc ion binding protein, putative, expressed -
17 Sobic.002G079000 expressed protein -
18 Sobic.001G376200 auxin response factor, putative, expressed -
19 Sobic.003G272700 transmembrane protein 16K, putative, expressed -
20 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -


Gene co-expression network
sample Sobic009G107300 Sobic009G107300 Sobic009G228000 Sobic009G228000 Sobic009G107300--Sobic009G228000 Sobic007G087000 Sobic007G087000 Sobic009G107300--Sobic007G087000 Sobic004G240400 Sobic004G240400 Sobic009G107300--Sobic004G240400 Sobic008G116700 Sobic008G116700 Sobic009G107300--Sobic008G116700 Sobic003G043000 Sobic003G043000 Sobic009G107300--Sobic003G043000 Sobic004G198600 Sobic004G198600 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic009G228000--Sobic009G107300 Sobic009G228000--Sobic003G043000 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic002G079000 Sobic002G079000 Sobic007G087000--Sobic002G079000 Sobic007G076400 Sobic007G076400 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic006G250800 Sobic006G250800 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic001G237600 Sobic001G237600 Sobic007G087000--Sobic001G237600 Sobic007G172700 Sobic007G172700 Sobic007G087000--Sobic007G172700 Sobic007G087000--Sobic009G107300 Sobic004G240400--Sobic009G228000 Sobic004G240400--Sobic004G198600 Sobic006G174850 Sobic006G174850 Sobic004G240400--Sobic006G174850 Sobic010G034100 Sobic010G034100 Sobic004G240400--Sobic010G034100 Sobic004G240400--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic004G240400--Sobic007G017800 Sobic004G240400--Sobic004G209700 Sobic005G062200 Sobic005G062200 Sobic004G240400--Sobic005G062200 Sobic004G240400--Sobic003G241700 Sobic008G116700--Sobic007G087000 Sobic002G200000 Sobic002G200000 Sobic008G116700--Sobic002G200000 Sobic001G114200 Sobic001G114200 Sobic008G116700--Sobic001G114200 Sobic008G116700--Sobic002G079000 Sobic002G076500 Sobic002G076500 Sobic008G116700--Sobic002G076500 Sobic008G116700--Sobic009G107300 Sobic008G116700--Sobic007G076400 Sobic008G069300 Sobic008G069300 Sobic008G116700--Sobic008G069300 Sobic008G116700--Sobic004G198600 Sobic004G265500 Sobic004G265500 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G043000--Sobic003G241700 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic004G198600--Sobic002G079000 Sobic004G198600--Sobic004G240400 Sobic010G068700 Sobic010G068700 Sobic004G198600--Sobic010G068700 Sobic004G198600--Sobic007G087000 Sobic004G198600--Sobic009G107300 Sobic004G198600--Sobic001G014200 Sobic002G355800 Sobic002G355800 Sobic004G198600--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic004G198600--Sobic010G169900 Sobic004G198600--Sobic008G116700 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic003G120300--Sobic010G034100 Sobic003G120300--Sobic009G107300 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic002G425500 Sobic002G425500 Sobic003G120300--Sobic002G425500 Sobic009G194000 Sobic009G194000 Sobic003G181700--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic003G181700--Sobic003G021600 Sobic004G122900 Sobic004G122900 Sobic003G181700--Sobic004G122900 Sobic001G490900 Sobic001G490900 Sobic003G181700--Sobic001G490900 Sobic003G181700--Sobic010G169900 Sobic003G181700--Sobic002G227500 Sobic006G060000 Sobic006G060000 Sobic003G181700--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G181700--Sobic009G122500 Sobic003G181700--Sobic007G172700 Sobic001G156900--Sobic009G122500 Sobic002G119600 Sobic002G119600 Sobic001G156900--Sobic002G119600 Sobic001G156900--Sobic001G308400 Sobic001G156900--Sobic002G227500 Sobic001G156900--Sobic004G122900 Sobic001G335000 Sobic001G335000 Sobic001G156900--Sobic001G335000 Sobic001G156900--Sobic010G169900 Sobic001G156900--Sobic003G181700 Sobic005G110499 Sobic005G110499 Sobic001G156900--Sobic005G110499
Octagon: transcription factors


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