Gene annotation
Transcriptome id Sobic.003G272700.1
Synonym Sb03g032470
Functional annotation transmembrane protein 16K, putative, expressed
UniProt C5XHM9
Pfam PF04547
Panther DB PTHR12308
NCBI CDD KOG2513; Protein required for meiotic chromosome segregation
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73020 : -
RAP-DB (Rice) LOC_Os01g51040.1 : transmembrane protein 16K, putative, expressed
MaizeGDB (Corn) Zm00025a038928 , Zm00025a027844 , Zm00025a055579 , Zm00025a032987
Brachypodium KQK09402 , KQK09403 , PNT72679 , KQK09404 , KQK09405
Barley HORVU3Hr1G066440.9 , HORVU3Hr1G066440.8 , HORVU3Hr1G066440.1 , HORVU3Hr1G066440.3 , HORVU3Hr1G066440.2 , HORVU3Hr1G066440.5 , HORVU3Hr1G066440.4 , HORVU3Hr1G066440.7 , HORVU3Hr1G066440.6 , HORVU3Hr1G066440.18 , HORVU3Hr1G066440.15 , HORVU3Hr1G066440.17 , HORVU3Hr1G066440.16 , HORVU3Hr1G066440.10 , HORVU3Hr1G066440.21 , HORVU3Hr1G066440.22 , HORVU3Hr1G066440.19 , HORVU3Hr1G066440.14 , HORVU3Hr1G066440.11 , HORVU3Hr1G066440.13 , HORVU3Hr1G066440.12
Wheat TraesCS3A02G252500 , TraesCS3D02G253100 , TraesCS3B02G284100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
2 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
3 Sobic.003G150100 expressed protein -
4 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
5 Sobic.004G172500 expressed protein -
6 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H
7 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
8 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
9 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
10 Sobic.004G213800 expressed protein -
11 Sobic.001G542450 - -
12 Sobic.010G226000 expressed protein -
13 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
14 Sobic.004G316700 MYB family transcription factor, putative, expressed -
15 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.006G210700 potassium transporter, putative, expressed -
17 Sobic.004G240400 tRNA synthetase, putative, expressed -
18 Sobic.010G051400 zinc finger protein, putative, expressed K04706: E3 SUMO-protein ligase PIAS1
19 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
20 Sobic.003G241700 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic003G272700 Sobic003G272700 Sobic009G228000 Sobic009G228000 Sobic003G272700--Sobic009G228000 Sobic009G107300 Sobic009G107300 Sobic003G272700--Sobic009G107300 Sobic003G150100 Sobic003G150100 Sobic003G272700--Sobic003G150100 Sobic006G056700 Sobic006G056700 Sobic003G272700--Sobic006G056700 Sobic004G172500 Sobic004G172500 Sobic003G272700--Sobic004G172500 Sobic003G297500 Sobic003G297500 Sobic003G272700--Sobic003G297500 Sobic003G363700 Sobic003G363700 Sobic003G272700--Sobic003G363700 Sobic006G267600 Sobic006G267600 Sobic003G272700--Sobic006G267600 Sobic004G320700 Sobic004G320700 Sobic003G272700--Sobic004G320700 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic009G107300--Sobic009G228000 Sobic007G087000 Sobic007G087000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic008G116700 Sobic008G116700 Sobic009G107300--Sobic008G116700 Sobic009G107300--Sobic003G043000 Sobic004G198600 Sobic004G198600 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic010G226000 Sobic010G226000 Sobic003G150100--Sobic010G226000 Sobic004G316700 Sobic004G316700 Sobic003G150100--Sobic004G316700 Sobic003G379200 Sobic003G379200 Sobic003G150100--Sobic003G379200 Sobic003G150100--Sobic003G272700 Sobic003G150100--Sobic009G228000 Sobic006G088200 Sobic006G088200 Sobic003G150100--Sobic006G088200 Sobic006G174850 Sobic006G174850 Sobic003G150100--Sobic006G174850 Sobic003G212900 Sobic003G212900 Sobic003G150100--Sobic003G212900 Sobic007G223000 Sobic007G223000 Sobic003G150100--Sobic007G223000 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic003G360400 Sobic003G360400 Sobic006G056700--Sobic003G360400 Sobic010G244900 Sobic010G244900 Sobic004G172500--Sobic010G244900 Sobic002G076500 Sobic002G076500 Sobic004G172500--Sobic002G076500 Sobic005G150600 Sobic005G150600 Sobic004G172500--Sobic005G150600 Sobic004G172500--Sobic003G363700 Sobic001G030000 Sobic001G030000 Sobic004G172500--Sobic001G030000 Sobic001G237600 Sobic001G237600 Sobic004G172500--Sobic001G237600 Sobic004G172500--Sobic009G228000 Sobic004G213800 Sobic004G213800 Sobic004G172500--Sobic004G213800 Sobic004G172500--Sobic003G272700 Sobic003G297500--Sobic009G228000 Sobic009G260650 Sobic009G260650 Sobic003G297500--Sobic009G260650 Sobic003G297500--Sobic006G267600 Sobic001G308400 Sobic001G308400 Sobic003G297500--Sobic001G308400 Sobic003G416700 Sobic003G416700 Sobic003G297500--Sobic003G416700 Sobic006G281700 Sobic006G281700 Sobic003G297500--Sobic006G281700 Sobic003G297500--Sobic009G107300 Sobic002G154000 Sobic002G154000 Sobic003G297500--Sobic002G154000 Sobic004G072200 Sobic004G072200 Sobic003G297500--Sobic004G072200 Sobic003G363700--Sobic003G379200 Sobic003G363700--Sobic001G237600 Sobic004G265500 Sobic004G265500 Sobic003G363700--Sobic004G265500 Sobic002G371700 Sobic002G371700 Sobic003G363700--Sobic002G371700 Sobic003G363700--Sobic009G228000 Sobic002G374300 Sobic002G374300 Sobic003G363700--Sobic002G374300 Sobic003G363700--Sobic003G043000 Sobic010G000800 Sobic010G000800 Sobic003G363700--Sobic010G000800 Sobic003G182300 Sobic003G182300 Sobic003G363700--Sobic003G182300 Sobic006G261400 Sobic006G261400 Sobic006G267600--Sobic006G261400 Sobic001G051700 Sobic001G051700 Sobic006G267600--Sobic001G051700 Sobic001G393900 Sobic001G393900 Sobic006G267600--Sobic001G393900 Sobic006G267600--Sobic002G154000 Sobic007G063000 Sobic007G063000 Sobic006G267600--Sobic007G063000 Sobic002G048700 Sobic002G048700 Sobic006G267600--Sobic002G048700 Sobic009G158100 Sobic009G158100 Sobic006G267600--Sobic009G158100 Sobic004G322400 Sobic004G322400 Sobic006G267600--Sobic004G322400 Sobic006G267600--Sobic003G416700 Sobic002G292900 Sobic002G292900 Sobic004G320700--Sobic002G292900 Sobic004G320700--Sobic001G237600 Sobic002G079000 Sobic002G079000 Sobic004G320700--Sobic002G079000 Sobic010G186100 Sobic010G186100 Sobic004G320700--Sobic010G186100 Sobic004G320700--Sobic010G244900 Sobic006G210700 Sobic006G210700 Sobic004G320700--Sobic006G210700 Sobic004G320700--Sobic007G087000 Sobic006G032300 Sobic006G032300 Sobic004G320700--Sobic006G032300 Sobic004G320700--Sobic009G228000
Octagon: transcription factors


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