Gene annotation
Transcriptome id Sobic.003G150100.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q3A9
Pfam -
Panther DB PTHR34057 PTHR34057:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37440 : -
RAP-DB (Rice) LOC_Os01g21450.1 : expressed protein
MaizeGDB (Corn) Zm00025a024355
Brachypodium KQK04154
Barley -
Wheat TraesCS7D02G389800 , TraesCS7B02G296400 , TraesCS7B02G296400 , TraesCS7D02G389800 , TraesCS7A02G394400 , TraesCS7A02G394400
Populus -


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cDNA sequences
Sobic.003G150100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G226000 expressed protein -
2 Sobic.004G316700 MYB family transcription factor, putative, expressed -
3 Sobic.003G379200 wound-responsive family protein, putative, expressed -
4 Sobic.003G272700 transmembrane protein 16K, putative, expressed -
5 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
6 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
7 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
8 Sobic.003G212900 zinc ion binding protein, putative, expressed -
9 Sobic.007G223000 hypothetical protein -
10 Sobic.004G323700 zinc finger family protein, putative, expressed -
11 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
12 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
13 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
14 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
15 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
16 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
17 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
18 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
19 Sobic.002G295500 expressed protein -
20 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3


Gene co-expression network
sample Sobic003G150100 Sobic003G150100 Sobic010G226000 Sobic010G226000 Sobic003G150100--Sobic010G226000 Sobic004G316700 Sobic004G316700 Sobic003G150100--Sobic004G316700 Sobic003G379200 Sobic003G379200 Sobic003G150100--Sobic003G379200 Sobic003G272700 Sobic003G272700 Sobic003G150100--Sobic003G272700 Sobic009G228000 Sobic009G228000 Sobic003G150100--Sobic009G228000 Sobic006G088200 Sobic006G088200 Sobic003G150100--Sobic006G088200 Sobic006G174850 Sobic006G174850 Sobic003G150100--Sobic006G174850 Sobic003G212900 Sobic003G212900 Sobic003G150100--Sobic003G212900 Sobic007G223000 Sobic007G223000 Sobic003G150100--Sobic007G223000 Sobic001G451400 Sobic001G451400 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic004G209700 Sobic004G209700 Sobic010G226000--Sobic004G209700 Sobic009G165700 Sobic009G165700 Sobic010G226000--Sobic009G165700 Sobic003G166750 Sobic003G166750 Sobic010G226000--Sobic003G166750 Sobic001G441400 Sobic001G441400 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic003G444800 Sobic003G444800 Sobic010G226000--Sobic003G444800 Sobic009G131900 Sobic009G131900 Sobic004G316700--Sobic009G131900 Sobic006G131000 Sobic006G131000 Sobic004G316700--Sobic006G131000 Sobic004G286500 Sobic004G286500 Sobic004G316700--Sobic004G286500 Sobic003G119700 Sobic003G119700 Sobic004G316700--Sobic003G119700 Sobic004G316700--Sobic003G150100 Sobic004G316700--Sobic006G174850 Sobic008G046500 Sobic008G046500 Sobic004G316700--Sobic008G046500 Sobic002G117400 Sobic002G117400 Sobic004G316700--Sobic002G117400 Sobic004G323700 Sobic004G323700 Sobic004G316700--Sobic004G323700 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic003G379200--Sobic006G174850 Sobic003G272700--Sobic009G228000 Sobic009G107300 Sobic009G107300 Sobic003G272700--Sobic009G107300 Sobic003G272700--Sobic003G150100 Sobic006G056700 Sobic006G056700 Sobic003G272700--Sobic006G056700 Sobic004G172500 Sobic004G172500 Sobic003G272700--Sobic004G172500 Sobic003G297500 Sobic003G297500 Sobic003G272700--Sobic003G297500 Sobic003G272700--Sobic003G363700 Sobic006G267600 Sobic006G267600 Sobic003G272700--Sobic006G267600 Sobic004G320700 Sobic004G320700 Sobic003G272700--Sobic004G320700 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic007G218000 Sobic007G218000 Sobic006G174850--Sobic007G218000 Sobic006G174850--Sobic006G131000 Sobic006G174850--Sobic009G044800 Sobic001G273700 Sobic001G273700 Sobic006G174850--Sobic001G273700 Sobic006G174850--Sobic003G379200 Sobic005G062200 Sobic005G062200 Sobic006G174850--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic006G174850--Sobic001G263600 Sobic007G132100 Sobic007G132100 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic001G042200 Sobic001G042200 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic002G257750 Sobic002G257750 Sobic007G223000--Sobic002G257750 Sobic003G398700 Sobic003G398700 Sobic007G223000--Sobic003G398700 Sobic005G100700 Sobic005G100700 Sobic007G223000--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic007G223000--Sobic003G221900 Sobic008G054000 Sobic008G054000 Sobic007G223000--Sobic008G054000 Sobic010G132600 Sobic010G132600 Sobic007G223000--Sobic010G132600 Sobic002G344000 Sobic002G344000 Sobic007G223000--Sobic002G344000 Sobic002G211800 Sobic002G211800 Sobic007G223000--Sobic002G211800 Sobic010G021500 Sobic010G021500 Sobic007G223000--Sobic010G021500
Octagon: transcription factors


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