Gene annotation
Transcriptome id Sobic.006G019300.2,Sobic.006G019300.1
Synonym Sb06g001810, HOS15
Functional annotation F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed
UniProt C5YCA7 , A0A1Z5RCQ1
Pfam PF00400 PF08513 PF08513 PF00400
Panther DB PTHR22846:SF2 PTHR22846 PTHR22846 PTHR22846:SF2
NCBI CDD KOG0273; Beta-transducin family (WD-40 repeat) protein
KEGG Orthology K04508; transducin (beta)-like 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G67320 : WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g22220.1 : F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed
MaizeGDB (Corn) Zm00025a055662 , Zm00025a012404
Brachypodium KQK20134
Barley HORVU2Hr1G053480.10 , HORVU2Hr1G053480.11 , HORVU2Hr1G053480.8 , HORVU2Hr1G053480.9 , HORVU2Hr1G053480.1 , HORVU2Hr1G053480.2 , HORVU2Hr1G053480.3 , HORVU2Hr1G053480.5 , HORVU2Hr1G053480.6 , HORVU2Hr1G053480.7 , HORVU2Hr1G053480.4
Wheat TraesCS2A02G227200 , TraesCS2A02G227200 , TraesCS2A02G227200 , TraesCS2B02G255700 , TraesCS2B02G255700 , TraesCS2B02G255700 , TraesCS2D02G235100
Populus -


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cDNA sequences
Sobic.006G019300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
2 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
3 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
4 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
5 Sobic.004G243600 AAA-type ATPase family protein, putative, expressed -
6 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
8 Sobic.005G200800 homeobox domain containing protein, expressed -
9 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
10 Sobic.003G150100 expressed protein -
11 Sobic.010G132600 selenoprotein O, putative, expressed -
12 Sobic.002G165800 - -
13 Sobic.003G040200 expressed protein -
14 Sobic.007G223000 hypothetical protein -
15 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
16 Sobic.006G096900 expressed protein -
17 Sobic.003G379200 wound-responsive family protein, putative, expressed -
18 Sobic.002G154000 EDM2, putative, expressed -
19 Sobic.002G344000 expressed protein -
20 Sobic.007G018400 expressed protein -


Gene co-expression network
sample Sobic006G019300 Sobic006G019300 Sobic005G100700 Sobic005G100700 Sobic006G019300--Sobic005G100700 Sobic002G374300 Sobic002G374300 Sobic006G019300--Sobic002G374300 Sobic006G056700 Sobic006G056700 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic004G243600 Sobic004G243600 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic004G317300 Sobic004G317300 Sobic006G019300--Sobic004G317300 Sobic005G200800 Sobic005G200800 Sobic006G019300--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic006G019300--Sobic003G360400 Sobic005G100700--Sobic003G360400 Sobic002G344000 Sobic002G344000 Sobic005G100700--Sobic002G344000 Sobic007G159900 Sobic007G159900 Sobic005G100700--Sobic007G159900 Sobic003G389200 Sobic003G389200 Sobic005G100700--Sobic003G389200 Sobic008G113100 Sobic008G113100 Sobic005G100700--Sobic008G113100 Sobic007G146100 Sobic007G146100 Sobic005G100700--Sobic007G146100 Sobic006G096900 Sobic006G096900 Sobic005G100700--Sobic006G096900 Sobic005G100700--Sobic001G456300 Sobic010G112100 Sobic010G112100 Sobic005G100700--Sobic010G112100 Sobic003G363700 Sobic003G363700 Sobic002G374300--Sobic003G363700 Sobic003G043000 Sobic003G043000 Sobic002G374300--Sobic003G043000 Sobic001G542450 Sobic001G542450 Sobic002G374300--Sobic001G542450 Sobic003G012000 Sobic003G012000 Sobic002G374300--Sobic003G012000 Sobic002G154000 Sobic002G154000 Sobic002G374300--Sobic002G154000 Sobic001G151100 Sobic001G151100 Sobic002G374300--Sobic001G151100 Sobic004G209700 Sobic004G209700 Sobic002G374300--Sobic004G209700 Sobic001G393900 Sobic001G393900 Sobic002G374300--Sobic001G393900 Sobic002G371700 Sobic002G371700 Sobic002G374300--Sobic002G371700 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic002G043100 Sobic002G043100 Sobic001G501800--Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic001G501800--Sobic004G107200 Sobic001G501800--Sobic005G200800 Sobic002G425500 Sobic002G425500 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic003G101500 Sobic003G101500 Sobic001G501800--Sobic003G101500 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic004G243600--Sobic002G374300 Sobic008G054000 Sobic008G054000 Sobic004G243600--Sobic008G054000 Sobic010G057500 Sobic010G057500 Sobic004G243600--Sobic010G057500 Sobic004G243600--Sobic006G019300 Sobic008G002300 Sobic008G002300 Sobic004G243600--Sobic008G002300 Sobic010G183300 Sobic010G183300 Sobic004G243600--Sobic010G183300 Sobic004G344000 Sobic004G344000 Sobic004G243600--Sobic004G344000 Sobic001G178300 Sobic001G178300 Sobic004G243600--Sobic001G178300 Sobic002G105700 Sobic002G105700 Sobic004G243600--Sobic002G105700 Sobic001G456300--Sobic005G100700 Sobic001G456300--Sobic003G360400 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic001G456300--Sobic010G112100 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic004G317300--Sobic005G100700 Sobic002G029100 Sobic002G029100 Sobic004G317300--Sobic002G029100 Sobic003G214600 Sobic003G214600 Sobic004G317300--Sobic003G214600 Sobic004G317300--Sobic006G019300 Sobic003G388100 Sobic003G388100 Sobic004G317300--Sobic003G388100 Sobic001G277900 Sobic001G277900 Sobic004G317300--Sobic001G277900 Sobic010G089400 Sobic010G089400 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic004G317300--Sobic003G360400 Sobic005G200800--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic005G200800--Sobic002G154000 Sobic005G200800--Sobic001G461400 Sobic009G255600 Sobic009G255600 Sobic005G200800--Sobic009G255600 Sobic005G200800--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic005G200800--Sobic003G416700 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300
Octagon: transcription factors


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