Gene annotation
Transcriptome id Sobic.003G040200.1,Sobic.003G040200.3,Sobic.003G040200.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q167
Pfam -
Panther DB PTHR10052 PTHR10052:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26060 : Ribosomal protein L18ae family
RAP-DB (Rice) LOC_Os01g08814.2,LOC_Os01g08814.3 : expressed protein
MaizeGDB (Corn) Zm00025a035818
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G040200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
2 Sobic.007G223000 hypothetical protein -
3 Sobic.010G132600 selenoprotein O, putative, expressed -
4 Sobic.004G243600 AAA-type ATPase family protein, putative, expressed -
5 Sobic.006G269700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G099200 expressed protein -
7 Sobic.010G220500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, putative, expressed K02083: allantoate deiminase
8 Sobic.007G217600 pentatricopeptide, putative, expressed -
9 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
10 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
11 Sobic.003G242900 viral A-type inclusion protein repeat containing protein, expressed -
12 Sobic.003G381700 DUF647 domain containing protein, putative, expressed -
13 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
14 Sobic.005G132200 expressed protein -
15 Sobic.010G089400 TLD family protein, putative, expressed -
16 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
17 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
18 Sobic.004G320100 expressed protein -
19 Sobic.001G539500 SKP1, putative, expressed -
20 Sobic.002G117000 expressed protein -


Gene co-expression network
sample Sobic003G040200 Sobic003G040200 Sobic006G019300 Sobic006G019300 Sobic003G040200--Sobic006G019300 Sobic007G223000 Sobic007G223000 Sobic003G040200--Sobic007G223000 Sobic010G132600 Sobic010G132600 Sobic003G040200--Sobic010G132600 Sobic004G243600 Sobic004G243600 Sobic003G040200--Sobic004G243600 Sobic006G269700 Sobic006G269700 Sobic003G040200--Sobic006G269700 Sobic007G099200 Sobic007G099200 Sobic003G040200--Sobic007G099200 Sobic010G220500 Sobic010G220500 Sobic003G040200--Sobic010G220500 Sobic007G217600 Sobic007G217600 Sobic003G040200--Sobic007G217600 Sobic008G054000 Sobic008G054000 Sobic003G040200--Sobic008G054000 Sobic005G100700 Sobic005G100700 Sobic006G019300--Sobic005G100700 Sobic002G374300 Sobic002G374300 Sobic006G019300--Sobic002G374300 Sobic006G056700 Sobic006G056700 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic004G317300 Sobic004G317300 Sobic006G019300--Sobic004G317300 Sobic005G200800 Sobic005G200800 Sobic006G019300--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic006G019300--Sobic003G360400 Sobic002G257750 Sobic002G257750 Sobic007G223000--Sobic002G257750 Sobic003G398700 Sobic003G398700 Sobic007G223000--Sobic003G398700 Sobic007G223000--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic007G223000--Sobic003G221900 Sobic007G223000--Sobic008G054000 Sobic007G223000--Sobic010G132600 Sobic002G344000 Sobic002G344000 Sobic007G223000--Sobic002G344000 Sobic002G211800 Sobic002G211800 Sobic007G223000--Sobic002G211800 Sobic010G021500 Sobic010G021500 Sobic007G223000--Sobic010G021500 Sobic010G132600--Sobic002G257750 Sobic004G146600 Sobic004G146600 Sobic010G132600--Sobic004G146600 Sobic005G106600 Sobic005G106600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic004G243600--Sobic002G374300 Sobic004G243600--Sobic008G054000 Sobic010G057500 Sobic010G057500 Sobic004G243600--Sobic010G057500 Sobic004G243600--Sobic006G019300 Sobic008G002300 Sobic008G002300 Sobic004G243600--Sobic008G002300 Sobic010G183300 Sobic010G183300 Sobic004G243600--Sobic010G183300 Sobic004G344000 Sobic004G344000 Sobic004G243600--Sobic004G344000 Sobic001G178300 Sobic001G178300 Sobic004G243600--Sobic001G178300 Sobic002G105700 Sobic002G105700 Sobic004G243600--Sobic002G105700 Sobic006G269700--Sobic003G040200 Sobic003G071000 Sobic003G071000 Sobic006G269700--Sobic003G071000 Sobic002G036400 Sobic002G036400 Sobic006G269700--Sobic002G036400 Sobic003G416400 Sobic003G416400 Sobic006G269700--Sobic003G416400 Sobic003G333900 Sobic003G333900 Sobic006G269700--Sobic003G333900 Sobic002G343300 Sobic002G343300 Sobic006G269700--Sobic002G343300 Sobic008G110300 Sobic008G110300 Sobic006G269700--Sobic008G110300 Sobic009G258100 Sobic009G258100 Sobic006G269700--Sobic009G258100 Sobic001G311100 Sobic001G311100 Sobic006G269700--Sobic001G311100 Sobic003G119700 Sobic003G119700 Sobic007G099200--Sobic003G119700 Sobic001G310100 Sobic001G310100 Sobic007G099200--Sobic001G310100 Sobic007G099200--Sobic007G223000 Sobic009G066900 Sobic009G066900 Sobic007G099200--Sobic009G066900 Sobic010G014100 Sobic010G014100 Sobic007G099200--Sobic010G014100 Sobic008G124900 Sobic008G124900 Sobic007G099200--Sobic008G124900 Sobic001G059200 Sobic001G059200 Sobic007G099200--Sobic001G059200 Sobic003G150100 Sobic003G150100 Sobic007G099200--Sobic003G150100 Sobic002G358400 Sobic002G358400 Sobic007G099200--Sobic002G358400 Sobic001G421900 Sobic001G421900 Sobic010G220500--Sobic001G421900 Sobic010G220500--Sobic003G040200 Sobic010G220500--Sobic002G358400 Sobic010G029900 Sobic010G029900 Sobic010G220500--Sobic010G029900 Sobic009G108700 Sobic009G108700 Sobic010G220500--Sobic009G108700 Sobic010G240900 Sobic010G240900 Sobic010G220500--Sobic010G240900 Sobic010G220500--Sobic007G099200 Sobic001G031600 Sobic001G031600 Sobic010G220500--Sobic001G031600 Sobic003G316700 Sobic003G316700 Sobic010G220500--Sobic003G316700 Sobic003G426900 Sobic003G426900 Sobic007G217600--Sobic003G426900 Sobic007G217600--Sobic003G040200 Sobic004G023900 Sobic004G023900 Sobic007G217600--Sobic004G023900 Sobic007G217600--Sobic006G019300 Sobic001G039500 Sobic001G039500 Sobic007G217600--Sobic001G039500 Sobic002G294400 Sobic002G294400 Sobic007G217600--Sobic002G294400 Sobic007G217600--Sobic006G269700 Sobic002G275200 Sobic002G275200 Sobic007G217600--Sobic002G275200 Sobic003G150500 Sobic003G150500 Sobic007G217600--Sobic003G150500 Sobic004G244900 Sobic004G244900 Sobic008G054000--Sobic004G244900 Sobic008G054000--Sobic004G356700 Sobic004G334300 Sobic004G334300 Sobic008G054000--Sobic004G334300 Sobic008G054000--Sobic002G257750 Sobic008G044100 Sobic008G044100 Sobic008G054000--Sobic008G044100 Sobic008G054000--Sobic003G398700 Sobic003G101700 Sobic003G101700 Sobic008G054000--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic008G054000--Sobic002G316600 Sobic008G054000--Sobic002G344000
Octagon: transcription factors


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