Gene annotation
Transcriptome id Sobic.003G242900.1
Synonym
Functional annotation viral A-type inclusion protein repeat containing protein, expressed
UniProt A0A1B6Q525
Pfam PF07765
Panther DB -
NCBI CDD KOG4674; Uncharacterized conserved coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03080 : kinase interacting (KIP1-like) family protein
RAP-DB (Rice) LOC_Os01g46810.1 : viral A-type inclusion protein repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a028192
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G040200 expressed protein -
2 Sobic.004G237200 similar to Putative uncharacterized protein(PubMedID : 29862293)@HVA22, putative, expressed -
3 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
4 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -
5 Sobic.002G105700 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
6 Sobic.004G243600 AAA-type ATPase family protein, putative, expressed -
7 Sobic.001G478500 expressed protein -
8 Sobic.007G042300 expressed protein -
9 Sobic.008G125900 drought induced 19 protein, putative, expressed -
10 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
11 Sobic.008G096000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.002G031900 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed -
13 Sobic.003G188300 expressed protein -
14 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
15 Sobic.010G057500 expressed protein K11138: telomere-associated protein RIF1
16 Sobic.008G111200 - -
17 Sobic.003G330900 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
18 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
19 Sobic.006G173800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase 3, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
20 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3


Gene co-expression network
sample Sobic003G242900 Sobic003G242900 Sobic003G040200 Sobic003G040200 Sobic003G242900--Sobic003G040200 Sobic004G237200 Sobic004G237200 Sobic003G242900--Sobic004G237200 Sobic006G019300 Sobic006G019300 Sobic003G242900--Sobic006G019300 Sobic010G015900 Sobic010G015900 Sobic003G242900--Sobic010G015900 Sobic002G105700 Sobic002G105700 Sobic003G242900--Sobic002G105700 Sobic004G243600 Sobic004G243600 Sobic003G242900--Sobic004G243600 Sobic001G478500 Sobic001G478500 Sobic003G242900--Sobic001G478500 Sobic007G042300 Sobic007G042300 Sobic003G242900--Sobic007G042300 Sobic008G125900 Sobic008G125900 Sobic003G242900--Sobic008G125900 Sobic003G040200--Sobic006G019300 Sobic007G223000 Sobic007G223000 Sobic003G040200--Sobic007G223000 Sobic010G132600 Sobic010G132600 Sobic003G040200--Sobic010G132600 Sobic003G040200--Sobic004G243600 Sobic006G269700 Sobic006G269700 Sobic003G040200--Sobic006G269700 Sobic007G099200 Sobic007G099200 Sobic003G040200--Sobic007G099200 Sobic010G220500 Sobic010G220500 Sobic003G040200--Sobic010G220500 Sobic007G217600 Sobic007G217600 Sobic003G040200--Sobic007G217600 Sobic008G054000 Sobic008G054000 Sobic003G040200--Sobic008G054000 Sobic010G154000 Sobic010G154000 Sobic004G237200--Sobic010G154000 Sobic004G237200--Sobic003G242900 Sobic004G237200--Sobic010G015900 Sobic004G237200--Sobic003G040200 Sobic004G237200--Sobic008G125900 Sobic004G237200--Sobic007G042300 Sobic007G195600 Sobic007G195600 Sobic004G237200--Sobic007G195600 Sobic008G042700 Sobic008G042700 Sobic004G237200--Sobic008G042700 Sobic003G382100 Sobic003G382100 Sobic004G237200--Sobic003G382100 Sobic005G100700 Sobic005G100700 Sobic006G019300--Sobic005G100700 Sobic002G374300 Sobic002G374300 Sobic006G019300--Sobic002G374300 Sobic006G056700 Sobic006G056700 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic004G317300 Sobic004G317300 Sobic006G019300--Sobic004G317300 Sobic005G200800 Sobic005G200800 Sobic006G019300--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic006G019300--Sobic003G360400 Sobic010G015900--Sobic007G042300 Sobic001G480550 Sobic001G480550 Sobic010G015900--Sobic001G480550 Sobic001G039500 Sobic001G039500 Sobic010G015900--Sobic001G039500 Sobic010G021200 Sobic010G021200 Sobic010G015900--Sobic010G021200 Sobic002G029100 Sobic002G029100 Sobic010G015900--Sobic002G029100 Sobic010G015900--Sobic001G501800 Sobic010G015900--Sobic010G154000 Sobic003G159500 Sobic003G159500 Sobic010G015900--Sobic003G159500 Sobic002G272250 Sobic002G272250 Sobic010G015900--Sobic002G272250 Sobic004G267900 Sobic004G267900 Sobic002G105700--Sobic004G267900 Sobic002G105700--Sobic004G243600 Sobic002G405200 Sobic002G405200 Sobic002G105700--Sobic002G405200 Sobic010G057500 Sobic010G057500 Sobic002G105700--Sobic010G057500 Sobic002G105700--Sobic002G374300 Sobic010G027900 Sobic010G027900 Sobic002G105700--Sobic010G027900 Sobic002G105700--Sobic006G019300 Sobic007G018400 Sobic007G018400 Sobic002G105700--Sobic007G018400 Sobic007G103500 Sobic007G103500 Sobic002G105700--Sobic007G103500 Sobic004G243600--Sobic002G374300 Sobic004G243600--Sobic008G054000 Sobic004G243600--Sobic010G057500 Sobic004G243600--Sobic006G019300 Sobic008G002300 Sobic008G002300 Sobic004G243600--Sobic008G002300 Sobic010G183300 Sobic010G183300 Sobic004G243600--Sobic010G183300 Sobic004G344000 Sobic004G344000 Sobic004G243600--Sobic004G344000 Sobic001G178300 Sobic001G178300 Sobic004G243600--Sobic001G178300 Sobic004G243600--Sobic002G105700 Sobic004G324700 Sobic004G324700 Sobic001G478500--Sobic004G324700 Sobic001G478500--Sobic008G054000 Sobic010G190700 Sobic010G190700 Sobic001G478500--Sobic010G190700 Sobic001G478500--Sobic010G183300 Sobic001G478500--Sobic001G501800 Sobic002G257750 Sobic002G257750 Sobic001G478500--Sobic002G257750 Sobic001G518100 Sobic001G518100 Sobic001G478500--Sobic001G518100 Sobic001G244700 Sobic001G244700 Sobic001G478500--Sobic001G244700 Sobic006G259800 Sobic006G259800 Sobic001G478500--Sobic006G259800 Sobic007G042300--Sobic010G015900 Sobic006G061100 Sobic006G061100 Sobic007G042300--Sobic006G061100 Sobic007G042300--Sobic003G159500 Sobic009G239900 Sobic009G239900 Sobic007G042300--Sobic009G239900 Sobic004G075700 Sobic004G075700 Sobic007G042300--Sobic004G075700 Sobic007G042300--Sobic001G480550 Sobic006G179600 Sobic006G179600 Sobic007G042300--Sobic006G179600 Sobic001G423300 Sobic001G423300 Sobic007G042300--Sobic001G423300 Sobic009G113100 Sobic009G113100 Sobic007G042300--Sobic009G113100 Sobic004G212700 Sobic004G212700 Sobic008G125900--Sobic004G212700 Sobic008G125900--Sobic010G015900 Sobic001G119900 Sobic001G119900 Sobic008G125900--Sobic001G119900 Sobic002G202000 Sobic002G202000 Sobic008G125900--Sobic002G202000 Sobic008G125900--Sobic003G040200 Sobic008G125900--Sobic004G237200 Sobic008G125900--Sobic010G154000 Sobic009G155250 Sobic009G155250 Sobic008G125900--Sobic009G155250 Sobic003G113800 Sobic003G113800 Sobic008G125900--Sobic003G113800
Octagon: transcription factors


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