Gene annotation
Transcriptome id Sobic.006G173800.2,Sobic.006G173800.1
Synonym HMA5, Sb06g024910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
copper-transporting ATPase 3, putative, expressed
UniProt Q6JAG3 , A0A1B6PMG1 , A0A1Z5REV0
Pfam PF12710 PF00403 PF00122
Panther DB PTHR24093 PTHR24093:SF315
NCBI CDD -
KEGG Orthology K17686; copA, ctpA, P-type Cu+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G63440 : heavy metal atpase 5
RAP-DB (Rice) LOC_Os04g46940.1 : copper-transporting ATPase 3, putative, expressed
MaizeGDB (Corn) Zm00025a010257 , Zm00025a010263
Brachypodium KQJ83984 , PNT61629 , PNT61628
Barley HORVU3Hr1G030560.1 , HORVU2Hr1G097010.9 , HORVU2Hr1G097010.8 , HORVU2Hr1G097010.3 , HORVU2Hr1G097010.2 , HORVU2Hr1G097010.1 , HORVU2Hr1G097010.7 , HORVU2Hr1G097010.6 , HORVU2Hr1G097010.5 , HORVU2Hr1G097010.4 , HORVU2Hr1G097010.13 , HORVU2Hr1G097010.12 , HORVU2Hr1G097010.11 , HORVU2Hr1G097010.10
Wheat TraesCS2D02G407800 , TraesCS2D02G407800 , TraesCS2D02G407800 , TraesCS2D02G407800 , TraesCS2D02G407800 , TraesCS2B02G429200 , TraesCS2B02G429200 , TraesCS2B02G429200 , TraesCS2A02G410400 , TraesCS2A02G410400 , TraesCS2A02G410400 , TraesCS2A02G410400
Populus PNT45230 , PNT45229


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cDNA sequences
Sobic.006G173800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338000 non-green plastid inner envelope membrane protein, putative, expressed -
2 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
3 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.002G213300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
5 Sobic.006G239000 "FLO2(Ortholog in rice:She et al., 2010)"(PubMedID : 31659901)@tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
6 Sobic.001G122900 expressed protein -
7 Sobic.010G177400 dehydrogenase/reductase SDR family member 12, putative, expressed K11168: dehydrogenase/reductase SDR family member 12
8 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
9 Sobic.001G062300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
10 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
11 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
12 Sobic.004G006800 expressed protein -
13 Sobic.008G060000 receptor-like protein kinase 2 precursor, putative, expressed -
14 Sobic.008G144900 DUF221 domain containing protein, expressed -
15 Sobic.006G270100 allantoinase, putative, expressed K01466: allantoinase
16 Sobic.001G446850 - -
17 Sobic.007G190000 expressed protein -
18 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
19 Sobic.002G346400 transmembrane protein 49, putative, expressed -
20 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12


Gene co-expression network
sample Sobic006G173800 Sobic006G173800 Sobic003G338000 Sobic003G338000 Sobic006G173800--Sobic003G338000 Sobic004G317300 Sobic004G317300 Sobic006G173800--Sobic004G317300 Sobic004G189200 Sobic004G189200 Sobic006G173800--Sobic004G189200 Sobic002G213300 Sobic002G213300 Sobic006G173800--Sobic002G213300 Sobic006G239000 Sobic006G239000 Sobic006G173800--Sobic006G239000 Sobic001G122900 Sobic001G122900 Sobic006G173800--Sobic001G122900 Sobic010G177400 Sobic010G177400 Sobic006G173800--Sobic010G177400 Sobic006G257800 Sobic006G257800 Sobic006G173800--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic006G173800--Sobic001G062300 Sobic010G020800 Sobic010G020800 Sobic003G338000--Sobic010G020800 Sobic008G039100 Sobic008G039100 Sobic003G338000--Sobic008G039100 Sobic004G356700 Sobic004G356700 Sobic003G338000--Sobic004G356700 Sobic003G338000--Sobic006G173800 Sobic001G373900 Sobic001G373900 Sobic003G338000--Sobic001G373900 Sobic003G338000--Sobic004G317300 Sobic008G060000 Sobic008G060000 Sobic003G338000--Sobic008G060000 Sobic008G144900 Sobic008G144900 Sobic003G338000--Sobic008G144900 Sobic001G519900 Sobic001G519900 Sobic003G338000--Sobic001G519900 Sobic005G100700 Sobic005G100700 Sobic004G317300--Sobic005G100700 Sobic002G029100 Sobic002G029100 Sobic004G317300--Sobic002G029100 Sobic003G214600 Sobic003G214600 Sobic004G317300--Sobic003G214600 Sobic006G019300 Sobic006G019300 Sobic004G317300--Sobic006G019300 Sobic003G388100 Sobic003G388100 Sobic004G317300--Sobic003G388100 Sobic001G277900 Sobic001G277900 Sobic004G317300--Sobic001G277900 Sobic010G089400 Sobic010G089400 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic003G360400 Sobic003G360400 Sobic004G317300--Sobic003G360400 Sobic004G189200--Sobic006G257800 Sobic004G189200--Sobic001G062300 Sobic006G051800 Sobic006G051800 Sobic004G189200--Sobic006G051800 Sobic008G167600 Sobic008G167600 Sobic004G189200--Sobic008G167600 Sobic007G190000 Sobic007G190000 Sobic004G189200--Sobic007G190000 Sobic004G231900 Sobic004G231900 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic002G383600 Sobic002G383600 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic004G001500 Sobic004G001500 Sobic002G213300--Sobic004G001500 Sobic001G534700 Sobic001G534700 Sobic002G213300--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic002G213300--Sobic009G074400 Sobic002G213300--Sobic004G356700 Sobic001G370900 Sobic001G370900 Sobic002G213300--Sobic001G370900 Sobic001G230000 Sobic001G230000 Sobic002G213300--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic002G213300--Sobic008G001200 Sobic003G198800 Sobic003G198800 Sobic002G213300--Sobic003G198800 Sobic003G155100 Sobic003G155100 Sobic002G213300--Sobic003G155100 Sobic006G239000--Sobic001G122900 Sobic007G227100 Sobic007G227100 Sobic006G239000--Sobic007G227100 Sobic001G331600 Sobic001G331600 Sobic006G239000--Sobic001G331600 Sobic004G312600 Sobic004G312600 Sobic006G239000--Sobic004G312600 Sobic003G003450 Sobic003G003450 Sobic006G239000--Sobic003G003450 Sobic003G271400 Sobic003G271400 Sobic006G239000--Sobic003G271400 Sobic001G378100 Sobic001G378100 Sobic006G239000--Sobic001G378100 Sobic004G328000 Sobic004G328000 Sobic006G239000--Sobic004G328000 Sobic004G035900 Sobic004G035900 Sobic006G239000--Sobic004G035900 Sobic001G122900--Sobic006G239000 Sobic001G122900--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic001G122900--Sobic001G485100 Sobic003G380200 Sobic003G380200 Sobic001G122900--Sobic003G380200 Sobic006G191500 Sobic006G191500 Sobic001G122900--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic001G122900--Sobic003G186800 Sobic002G161400 Sobic002G161400 Sobic001G122900--Sobic002G161400 Sobic009G225600 Sobic009G225600 Sobic001G122900--Sobic009G225600 Sobic004G128900 Sobic004G128900 Sobic001G122900--Sobic004G128900 Sobic010G177400--Sobic006G257800 Sobic001G021000 Sobic001G021000 Sobic010G177400--Sobic001G021000 Sobic003G190400 Sobic003G190400 Sobic010G177400--Sobic003G190400 Sobic010G177400--Sobic008G167600 Sobic010G227100 Sobic010G227100 Sobic010G177400--Sobic010G227100 Sobic010G177400--Sobic007G190000 Sobic010G177400--Sobic003G198800 Sobic010G177400--Sobic002G383600 Sobic002G341000 Sobic002G341000 Sobic010G177400--Sobic002G341000 Sobic006G257800--Sobic008G167600 Sobic006G257800--Sobic004G189200 Sobic006G257800--Sobic003G198800 Sobic006G257800--Sobic002G383600 Sobic006G257800--Sobic001G062300 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G257800--Sobic006G051800 Sobic006G257800--Sobic002G341000 Sobic001G062300--Sobic006G257800 Sobic001G062300--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic001G062300--Sobic006G275100 Sobic001G062300--Sobic008G167600 Sobic001G062300--Sobic007G190000 Sobic004G211866 Sobic004G211866 Sobic001G062300--Sobic004G211866 Sobic001G062300--Sobic003G301500 Sobic010G272800 Sobic010G272800 Sobic001G062300--Sobic010G272800 Sobic001G062300--Sobic002G383600
Octagon: transcription factors


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