Gene annotation
Transcriptome id Sobic.006G239000.1
Synonym Sb06g030550
Functional annotation "FLO2(Ortholog in rice:She et al., 2010)" (PubMedID : 31659901)
tetratricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1B6PNK5
Pfam PF15044 PF12807 PF13424
Panther DB PTHR12601 PTHR12601:SF18
NCBI CDD KOG1839; Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3
KEGG Orthology K03255; TIF31, protein TIF31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28080 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g55230.1 : tetratricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009559 , Zm00025a057193
Brachypodium KQK01113 , KQJ84949
Barley HORVU2Hr1G114580.9 , HORVU2Hr1G114580.8 , HORVU2Hr1G114580.7 , HORVU2Hr1G114580.6 , HORVU2Hr1G114580.5 , HORVU2Hr1G114580.2 , HORVU2Hr1G114580.1 , HORVU2Hr1G114580.24 , HORVU2Hr1G114580.20 , HORVU2Hr1G114580.21 , HORVU6Hr1G084650.9 , HORVU6Hr1G084650.1 , HORVU6Hr1G084650.3 , HORVU6Hr1G084650.2 , HORVU6Hr1G084650.5 , HORVU6Hr1G084650.4 , HORVU6Hr1G084650.7 , HORVU6Hr1G084650.6 , HORVU2Hr1G114580.4 , HORVU2Hr1G114580.3 , HORVU6Hr1G084650.14 , HORVU6Hr1G084650.11 , HORVU6Hr1G084650.10 , HORVU6Hr1G084650.13 , HORVU6Hr1G084650.12 , HORVU2Hr1G114580.22 , HORVU2Hr1G114580.17 , HORVU2Hr1G114580.16 , HORVU2Hr1G114580.15 , HORVU2Hr1G114580.14 , HORVU2Hr1G114580.13 , HORVU2Hr1G114580.12 , HORVU2Hr1G114580.11 , HORVU2Hr1G114580.10 , HORVU2Hr1G114580.19 , HORVU2Hr1G114580.18 , HORVU6Hr1G084650.8
Wheat TraesCS2A02G517100 , TraesCS6B02G387400 , TraesCS6A02G354400 , TraesCS2B02G545600 , TraesCS2B02G545600 , TraesCS2B02G545600 , TraesCS2D02G518700 , TraesCS2D02G518700 , TraesCS2D02G518700 , TraesCS2A02G517100 , TraesCS2A02G517100
Populus -


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cDNA sequences
Sobic.006G239000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122900 expressed protein -
2 Sobic.007G227100 expressed protein -
3 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
4 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
5 Sobic.003G003450 - K01177: beta-amylase
6 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
7 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
8 Sobic.004G328000 snf1-related kinase interactor 2, putative, expressed -
9 Sobic.004G035900 expressed protein -
10 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
11 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
12 Sobic.004G355700 C2 domain containing protein, putative, expressed -
13 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
15 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G077300 thioredoxin, putative, expressed -
17 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
18 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.001G169900 seed maturation protein PM23, putative, expressed -


Gene co-expression network
sample Sobic006G239000 Sobic006G239000 Sobic001G122900 Sobic001G122900 Sobic006G239000--Sobic001G122900 Sobic007G227100 Sobic007G227100 Sobic006G239000--Sobic007G227100 Sobic001G331600 Sobic001G331600 Sobic006G239000--Sobic001G331600 Sobic004G312600 Sobic004G312600 Sobic006G239000--Sobic004G312600 Sobic003G003450 Sobic003G003450 Sobic006G239000--Sobic003G003450 Sobic003G271400 Sobic003G271400 Sobic006G239000--Sobic003G271400 Sobic001G378100 Sobic001G378100 Sobic006G239000--Sobic001G378100 Sobic004G328000 Sobic004G328000 Sobic006G239000--Sobic004G328000 Sobic004G035900 Sobic004G035900 Sobic006G239000--Sobic004G035900 Sobic001G122900--Sobic006G239000 Sobic001G122900--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic001G122900--Sobic001G485100 Sobic003G380200 Sobic003G380200 Sobic001G122900--Sobic003G380200 Sobic006G191500 Sobic006G191500 Sobic001G122900--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic001G122900--Sobic003G186800 Sobic002G161400 Sobic002G161400 Sobic001G122900--Sobic002G161400 Sobic009G225600 Sobic009G225600 Sobic001G122900--Sobic009G225600 Sobic004G128900 Sobic004G128900 Sobic001G122900--Sobic004G128900 Sobic007G227100--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic007G227100--Sobic004G127800 Sobic001G077300 Sobic001G077300 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic008G038500 Sobic008G038500 Sobic007G227100--Sobic008G038500 Sobic002G382700 Sobic002G382700 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic007G227100--Sobic001G485100 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G046000 Sobic001G046000 Sobic001G331600--Sobic001G046000 Sobic001G331600--Sobic004G312600 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic001G331600--Sobic004G344600 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic003G271400--Sobic007G227100 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic003G271400--Sobic004G127800 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic004G328000--Sobic004G035900 Sobic001G017300 Sobic001G017300 Sobic004G328000--Sobic001G017300 Sobic003G276300 Sobic003G276300 Sobic004G328000--Sobic003G276300 Sobic006G158100 Sobic006G158100 Sobic004G328000--Sobic006G158100 Sobic001G169900 Sobic001G169900 Sobic004G328000--Sobic001G169900 Sobic006G142600 Sobic006G142600 Sobic004G328000--Sobic006G142600 Sobic003G005000 Sobic003G005000 Sobic004G328000--Sobic003G005000 Sobic007G157300 Sobic007G157300 Sobic004G328000--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic004G328000--Sobic001G283100 Sobic004G035900--Sobic003G005000 Sobic004G035900--Sobic001G283100 Sobic004G035900--Sobic001G485100 Sobic004G035900--Sobic003G003450 Sobic004G035900--Sobic001G331600 Sobic004G035900--Sobic007G157300 Sobic008G149100 Sobic008G149100 Sobic004G035900--Sobic008G149100 Sobic001G015200 Sobic001G015200 Sobic004G035900--Sobic001G015200 Sobic003G228300 Sobic003G228300 Sobic004G035900--Sobic003G228300
Octagon: transcription factors


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