Gene annotation
Transcriptome id Sobic.003G338000.1,Sobic.003G338000.2
Synonym Sb03g038220
Functional annotation non-green plastid inner envelope membrane protein, putative, expressed
UniProt C5XNA4
Pfam PF03647
Panther DB PTHR12668 PTHR12668:SF19
NCBI CDD KOG4267; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G38550 : Transmembrane proteins 14C
RAP-DB (Rice) LOC_Os01g60650.1 : non-green plastid inner envelope membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a027055 , Zm00025a039767 , Zm00025a008302
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G338000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
2 Sobic.008G039100 SacI homology domain containing protein, expressed -
3 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
4 Sobic.006G173800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase 3, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
5 Sobic.001G373900 MYB family transcription factor, putative, expressed -
6 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
7 Sobic.008G060000 receptor-like protein kinase 2 precursor, putative, expressed -
8 Sobic.008G144900 DUF221 domain containing protein, expressed -
9 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
10 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
11 Sobic.004G143475 - -
12 Sobic.001G277900 expressed protein -
13 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
14 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
15 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
17 Sobic.005G133600 - -
18 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
19 Sobic.001G446850 - -
20 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G338000 Sobic003G338000 Sobic010G020800 Sobic010G020800 Sobic003G338000--Sobic010G020800 Sobic008G039100 Sobic008G039100 Sobic003G338000--Sobic008G039100 Sobic004G356700 Sobic004G356700 Sobic003G338000--Sobic004G356700 Sobic006G173800 Sobic006G173800 Sobic003G338000--Sobic006G173800 Sobic001G373900 Sobic001G373900 Sobic003G338000--Sobic001G373900 Sobic004G317300 Sobic004G317300 Sobic003G338000--Sobic004G317300 Sobic008G060000 Sobic008G060000 Sobic003G338000--Sobic008G060000 Sobic008G144900 Sobic008G144900 Sobic003G338000--Sobic008G144900 Sobic001G519900 Sobic001G519900 Sobic003G338000--Sobic001G519900 Sobic003G190400 Sobic003G190400 Sobic010G020800--Sobic003G190400 Sobic001G517800 Sobic001G517800 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic007G190000 Sobic007G190000 Sobic010G020800--Sobic007G190000 Sobic002G146300 Sobic002G146300 Sobic010G020800--Sobic002G146300 Sobic003G301900 Sobic003G301900 Sobic010G020800--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400 Sobic008G039100--Sobic002G146300 Sobic008G001200 Sobic008G001200 Sobic008G039100--Sobic008G001200 Sobic008G039100--Sobic004G001500 Sobic003G388100 Sobic003G388100 Sobic008G039100--Sobic003G388100 Sobic004G143475 Sobic004G143475 Sobic008G039100--Sobic004G143475 Sobic003G205200 Sobic003G205200 Sobic008G039100--Sobic003G205200 Sobic001G454500 Sobic001G454500 Sobic008G039100--Sobic001G454500 Sobic006G219600 Sobic006G219600 Sobic008G039100--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic008G039100--Sobic003G155100 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic004G356700--Sobic002G146300 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic006G173800--Sobic003G338000 Sobic006G173800--Sobic004G317300 Sobic004G189200 Sobic004G189200 Sobic006G173800--Sobic004G189200 Sobic002G213300 Sobic002G213300 Sobic006G173800--Sobic002G213300 Sobic006G239000 Sobic006G239000 Sobic006G173800--Sobic006G239000 Sobic001G122900 Sobic001G122900 Sobic006G173800--Sobic001G122900 Sobic010G177400 Sobic010G177400 Sobic006G173800--Sobic010G177400 Sobic006G257800 Sobic006G257800 Sobic006G173800--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic006G173800--Sobic001G062300 Sobic001G373900--Sobic001G519900 Sobic001G375100 Sobic001G375100 Sobic001G373900--Sobic001G375100 Sobic001G373900--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic001G373900--Sobic007G103100 Sobic001G373900--Sobic004G334300 Sobic003G186000 Sobic003G186000 Sobic001G373900--Sobic003G186000 Sobic001G373900--Sobic008G001200 Sobic003G195000 Sobic003G195000 Sobic001G373900--Sobic003G195000 Sobic001G373900--Sobic002G146300 Sobic005G100700 Sobic005G100700 Sobic004G317300--Sobic005G100700 Sobic002G029100 Sobic002G029100 Sobic004G317300--Sobic002G029100 Sobic003G214600 Sobic003G214600 Sobic004G317300--Sobic003G214600 Sobic006G019300 Sobic006G019300 Sobic004G317300--Sobic006G019300 Sobic004G317300--Sobic003G388100 Sobic001G277900 Sobic001G277900 Sobic004G317300--Sobic001G277900 Sobic010G089400 Sobic010G089400 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic003G360400 Sobic003G360400 Sobic004G317300--Sobic003G360400 Sobic003G029500 Sobic003G029500 Sobic008G060000--Sobic003G029500 Sobic008G060000--Sobic006G219600 Sobic009G074400 Sobic009G074400 Sobic008G060000--Sobic009G074400 Sobic006G050700 Sobic006G050700 Sobic008G060000--Sobic006G050700 Sobic006G051800 Sobic006G051800 Sobic008G060000--Sobic006G051800 Sobic006G133900 Sobic006G133900 Sobic008G060000--Sobic006G133900 Sobic004G181600 Sobic004G181600 Sobic008G060000--Sobic004G181600 Sobic002G198200 Sobic002G198200 Sobic008G060000--Sobic002G198200 Sobic001G333800 Sobic001G333800 Sobic008G060000--Sobic001G333800 Sobic001G430400 Sobic001G430400 Sobic008G144900--Sobic001G430400 Sobic002G346400 Sobic002G346400 Sobic008G144900--Sobic002G346400 Sobic006G032300 Sobic006G032300 Sobic008G144900--Sobic006G032300 Sobic008G144900--Sobic001G446850 Sobic008G144900--Sobic010G089400 Sobic008G144900--Sobic008G060000 Sobic008G144900--Sobic009G074400 Sobic008G144900--Sobic003G388100 Sobic008G144900--Sobic008G039100 Sobic001G519900--Sobic001G373900 Sobic001G519900--Sobic004G334300 Sobic002G308700 Sobic002G308700 Sobic001G519900--Sobic002G308700 Sobic001G519900--Sobic003G186000 Sobic005G162500 Sobic005G162500 Sobic001G519900--Sobic005G162500 Sobic001G519900--Sobic004G356700 Sobic001G519900--Sobic001G375100 Sobic001G192000 Sobic001G192000 Sobic001G519900--Sobic001G192000 Sobic006G259800 Sobic006G259800 Sobic001G519900--Sobic006G259800
Octagon: transcription factors


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