Gene annotation
Transcriptome id Sobic.007G042300.1
Synonym Sb07g003500
Functional annotation expressed protein
UniProt C5YGW5
Pfam PF07851
Panther DB PTHR21433 PTHR21433:SF4
NCBI CDD KOG4758; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G33230 : TMPIT-like protein
RAP-DB (Rice) LOC_Os08g05660.1 : expressed protein
MaizeGDB (Corn) Zm00025a055202 , Zm00025a030122
Brachypodium KQJ95408 , KQJ95409 , PNT65693 , KQJ95407 , PNT65694 , KQJ95410 , KQJ92832 , PNT66793
Barley HORVU6Hr1G004260.1 , HORVU6Hr1G004260.2 , HORVU6Hr1G004260.3 , HORVU6Hr1G004260.4 , HORVU6Hr1G004260.5 , HORVU6Hr1G004260.6 , HORVU7Hr1G071960.2 , HORVU7Hr1G071960.3 , HORVU7Hr1G071960.1 , HORVU7Hr1G071960.6 , HORVU7Hr1G071960.4 , HORVU7Hr1G071960.5
Wheat TraesCS7A02G303400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
3 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.009G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
5 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
6 Sobic.001G480550 - -
7 Sobic.006G179600 RWP-RK domain-containing protein, putative, expressed -
8 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
9 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
10 Sobic.006G046300 histidine kinase, putative, expressed -
11 Sobic.002G393332 - -
12 Sobic.005G150600 expressed protein -
13 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
14 Sobic.002G272250 - -
15 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
16 Sobic.003G217500 expressed protein -
17 Sobic.003G026900 expressed protein -
18 Sobic.010G207400 protein kinase domain containing protein, expressed -
19 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
20 Sobic.008G179800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -


Gene co-expression network
sample Sobic007G042300 Sobic007G042300 Sobic010G015900 Sobic010G015900 Sobic007G042300--Sobic010G015900 Sobic006G061100 Sobic006G061100 Sobic007G042300--Sobic006G061100 Sobic003G159500 Sobic003G159500 Sobic007G042300--Sobic003G159500 Sobic009G239900 Sobic009G239900 Sobic007G042300--Sobic009G239900 Sobic004G075700 Sobic004G075700 Sobic007G042300--Sobic004G075700 Sobic001G480550 Sobic001G480550 Sobic007G042300--Sobic001G480550 Sobic006G179600 Sobic006G179600 Sobic007G042300--Sobic006G179600 Sobic001G423300 Sobic001G423300 Sobic007G042300--Sobic001G423300 Sobic009G113100 Sobic009G113100 Sobic007G042300--Sobic009G113100 Sobic010G015900--Sobic007G042300 Sobic010G015900--Sobic001G480550 Sobic001G039500 Sobic001G039500 Sobic010G015900--Sobic001G039500 Sobic010G021200 Sobic010G021200 Sobic010G015900--Sobic010G021200 Sobic002G029100 Sobic002G029100 Sobic010G015900--Sobic002G029100 Sobic001G501800 Sobic001G501800 Sobic010G015900--Sobic001G501800 Sobic010G154000 Sobic010G154000 Sobic010G015900--Sobic010G154000 Sobic010G015900--Sobic003G159500 Sobic002G272250 Sobic002G272250 Sobic010G015900--Sobic002G272250 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic010G207400 Sobic010G207400 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic003G159500--Sobic006G179600 Sobic003G159500--Sobic006G061100 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic008G160500 Sobic008G160500 Sobic003G159500--Sobic008G160500 Sobic002G033500 Sobic002G033500 Sobic009G239900--Sobic002G033500 Sobic006G046300 Sobic006G046300 Sobic009G239900--Sobic006G046300 Sobic009G239900--Sobic006G061100 Sobic004G210000 Sobic004G210000 Sobic009G239900--Sobic004G210000 Sobic009G239900--Sobic007G042300 Sobic001G305100 Sobic001G305100 Sobic009G239900--Sobic001G305100 Sobic003G027350 Sobic003G027350 Sobic009G239900--Sobic003G027350 Sobic005G074400 Sobic005G074400 Sobic009G239900--Sobic005G074400 Sobic006G161300 Sobic006G161300 Sobic009G239900--Sobic006G161300 Sobic006G186300 Sobic006G186300 Sobic004G075700--Sobic006G186300 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic004G075700--Sobic003G026900 Sobic004G075700--Sobic006G061100 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800 Sobic002G393332 Sobic002G393332 Sobic001G480550--Sobic002G393332 Sobic003G214700 Sobic003G214700 Sobic001G480550--Sobic003G214700 Sobic001G480550--Sobic009G113100 Sobic001G480550--Sobic010G015900 Sobic004G155800 Sobic004G155800 Sobic001G480550--Sobic004G155800 Sobic004G065800 Sobic004G065800 Sobic001G480550--Sobic004G065800 Sobic001G480550--Sobic007G042300 Sobic001G480550--Sobic010G021200 Sobic001G367700 Sobic001G367700 Sobic001G480550--Sobic001G367700 Sobic006G179600--Sobic003G159500 Sobic006G179600--Sobic006G061100 Sobic006G179600--Sobic010G207400 Sobic001G341001 Sobic001G341001 Sobic006G179600--Sobic001G341001 Sobic010G227400 Sobic010G227400 Sobic006G179600--Sobic010G227400 Sobic006G015750 Sobic006G015750 Sobic006G179600--Sobic006G015750 Sobic003G091400 Sobic003G091400 Sobic006G179600--Sobic003G091400 Sobic002G409250 Sobic002G409250 Sobic006G179600--Sobic002G409250 Sobic002G078800 Sobic002G078800 Sobic006G179600--Sobic002G078800 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic001G423300--Sobic010G207400 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic001G423300--Sobic006G061100 Sobic001G423300--Sobic004G075700 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.