Gene annotation
Transcriptome id Sobic.010G015900.1,Sobic.010G015900.2
Synonym SLK2, Sb10g001560
Functional annotation transcriptional corepressor SEUSS, putative, expressed
UniProt A0A194YGT4 , A0A194YGU7
Pfam PF01803
Panther DB PTHR10378 PTHR10378:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003712transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G62090 : SEUSS-like 2
RAP-DB (Rice) LOC_Os06g03600.1 : transcriptional corepressor SEUSS, putative, expressed
MaizeGDB (Corn) Zm00025a045099 , Zm00025a041334 , Zm00025a050226
Brachypodium KQK19637
Barley HORVU7Hr1G010050.10 , HORVU7Hr1G115870.1 , HORVU7Hr1G115870.3 , HORVU7Hr1G115870.2 , HORVU7Hr1G115870.4 , HORVU7Hr1G115870.7 , HORVU7Hr1G115870.6 , HORVU7Hr1G029650.9 , HORVU7Hr1G029650.8 , HORVU7Hr1G029650.3 , HORVU7Hr1G029650.2 , HORVU7Hr1G029650.5 , HORVU7Hr1G029650.4 , HORVU7Hr1G029650.7 , HORVU7Hr1G029650.6 , HORVU7Hr1G029650.11 , HORVU7Hr1G029650.10 , HORVU7Hr1G010050.3 , HORVU7Hr1G010050.2 , HORVU7Hr1G010050.1 , HORVU7Hr1G010050.7 , HORVU7Hr1G010050.6 , HORVU7Hr1G010050.5 , HORVU7Hr1G010050.4 , HORVU7Hr1G010050.9 , HORVU7Hr1G010050.8
Wheat TraesCS7D02G146100 , TraesCS7B02G437100 , TraesCS7A02G054900 , TraesCS7D02G050000 , TraesCS4A02G441500 , TraesCS7D02G050000 , TraesCS7A02G520700 , TraesCS7A02G520700 , TraesCS7D02G510400 , TraesCS7D02G510400 , TraesCS7B02G047100 , TraesCS7D02G146100 , TraesCS7D02G050000 , TraesCS7B02G047100 , TraesCS7B02G047100 , TraesCS7B02G047100 , TraesCS7D02G050000 , TraesCS7A02G144600 , TraesCS7A02G144600 , TraesCS7A02G144600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G042300 expressed protein -
2 Sobic.001G480550 - -
3 Sobic.001G039500 protein kinase domain containing protein, expressed -
4 Sobic.010G021200 GAGA-binding protein, putative, expressed -
5 Sobic.002G029100 GYF domain containing protein, putative, expressed -
6 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
7 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
8 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G272250 - -
10 Sobic.008G125900 drought induced 19 protein, putative, expressed -
11 Sobic.007G201800 DNA repair ATPase-related, putative, expressed -
12 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
13 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
14 Sobic.002G202000 double-stranded RNA binding motif containing protein, expressed -
15 Sobic.006G051900 expressed protein -
16 Sobic.004G320100 expressed protein -
17 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
18 Sobic.005G065100 OsFBX234 - F-box domain containing protein, expressed -
19 Sobic.008G145800 nucleobase-ascorbate transporter, putative, expressed -
20 Sobic.007G183300 expressed protein -


Gene co-expression network
sample Sobic010G015900 Sobic010G015900 Sobic007G042300 Sobic007G042300 Sobic010G015900--Sobic007G042300 Sobic001G480550 Sobic001G480550 Sobic010G015900--Sobic001G480550 Sobic001G039500 Sobic001G039500 Sobic010G015900--Sobic001G039500 Sobic010G021200 Sobic010G021200 Sobic010G015900--Sobic010G021200 Sobic002G029100 Sobic002G029100 Sobic010G015900--Sobic002G029100 Sobic001G501800 Sobic001G501800 Sobic010G015900--Sobic001G501800 Sobic010G154000 Sobic010G154000 Sobic010G015900--Sobic010G154000 Sobic003G159500 Sobic003G159500 Sobic010G015900--Sobic003G159500 Sobic002G272250 Sobic002G272250 Sobic010G015900--Sobic002G272250 Sobic007G042300--Sobic010G015900 Sobic006G061100 Sobic006G061100 Sobic007G042300--Sobic006G061100 Sobic007G042300--Sobic003G159500 Sobic009G239900 Sobic009G239900 Sobic007G042300--Sobic009G239900 Sobic004G075700 Sobic004G075700 Sobic007G042300--Sobic004G075700 Sobic007G042300--Sobic001G480550 Sobic006G179600 Sobic006G179600 Sobic007G042300--Sobic006G179600 Sobic001G423300 Sobic001G423300 Sobic007G042300--Sobic001G423300 Sobic009G113100 Sobic009G113100 Sobic007G042300--Sobic009G113100 Sobic002G393332 Sobic002G393332 Sobic001G480550--Sobic002G393332 Sobic003G214700 Sobic003G214700 Sobic001G480550--Sobic003G214700 Sobic001G480550--Sobic009G113100 Sobic001G480550--Sobic010G015900 Sobic004G155800 Sobic004G155800 Sobic001G480550--Sobic004G155800 Sobic004G065800 Sobic004G065800 Sobic001G480550--Sobic004G065800 Sobic001G480550--Sobic007G042300 Sobic001G480550--Sobic010G021200 Sobic001G367700 Sobic001G367700 Sobic001G480550--Sobic001G367700 Sobic001G039500--Sobic010G015900 Sobic004G023900 Sobic004G023900 Sobic001G039500--Sobic004G023900 Sobic002G400400 Sobic002G400400 Sobic001G039500--Sobic002G400400 Sobic001G039500--Sobic003G159500 Sobic006G245100 Sobic006G245100 Sobic001G039500--Sobic006G245100 Sobic008G115000 Sobic008G115000 Sobic001G039500--Sobic008G115000 Sobic007G041300 Sobic007G041300 Sobic001G039500--Sobic007G041300 Sobic006G120800 Sobic006G120800 Sobic001G039500--Sobic006G120800 Sobic001G033400 Sobic001G033400 Sobic001G039500--Sobic001G033400 Sobic010G021200--Sobic007G041300 Sobic006G276000 Sobic006G276000 Sobic010G021200--Sobic006G276000 Sobic006G051900 Sobic006G051900 Sobic010G021200--Sobic006G051900 Sobic010G029900 Sobic010G029900 Sobic010G021200--Sobic010G029900 Sobic010G021200--Sobic010G015900 Sobic006G278200 Sobic006G278200 Sobic010G021200--Sobic006G278200 Sobic010G021200--Sobic001G480550 Sobic007G002900 Sobic007G002900 Sobic010G021200--Sobic007G002900 Sobic010G194700 Sobic010G194700 Sobic010G021200--Sobic010G194700 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic002G043100 Sobic002G043100 Sobic001G501800--Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic001G501800--Sobic004G107200 Sobic001G501800--Sobic005G200800 Sobic002G425500 Sobic002G425500 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic003G101500 Sobic003G101500 Sobic001G501800--Sobic003G101500 Sobic003G360400 Sobic003G360400 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic003G159500--Sobic006G179600 Sobic003G159500--Sobic006G061100 Sobic010G207400 Sobic010G207400 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic008G160500 Sobic008G160500 Sobic003G159500--Sobic008G160500 Sobic002G272250--Sobic010G015900 Sobic002G272250--Sobic007G042300 Sobic006G003951 Sobic006G003951 Sobic002G272250--Sobic006G003951 Sobic008G145800 Sobic008G145800 Sobic002G272250--Sobic008G145800 Sobic002G272250--Sobic001G480550 Sobic001G021000 Sobic001G021000 Sobic002G272250--Sobic001G021000 Sobic001G313900 Sobic001G313900 Sobic002G272250--Sobic001G313900 Sobic007G101500 Sobic007G101500 Sobic002G272250--Sobic007G101500 Sobic009G176366 Sobic009G176366 Sobic002G272250--Sobic009G176366
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.