Gene annotation
Transcriptome id Sobic.010G021200.1
Synonym BPC6, BBR/BPC6, Sb10g002020, ATBPC6
Functional annotation GAGA-binding protein, putative, expressed
UniProt C5Z3A8
Pfam PF06217
Panther DB PTHR31421 PTHR31421:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42520 : basic pentacysteine 6
RAP-DB (Rice) LOC_Os06g04010.2 : GAGA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a050171
Brachypodium KQK19713
Barley HORVU7Hr1G012840.2 , HORVU7Hr1G012840.3 , HORVU7Hr1G012840.1 , HORVU7Hr1G012840.6 , HORVU7Hr1G012840.4 , HORVU7Hr1G012840.5
Wheat TraesCS7A02G066900 , TraesCS7D02G061300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G021200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G041300 expressed protein -
2 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
3 Sobic.006G051900 expressed protein -
4 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
5 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -
6 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
7 Sobic.001G480550 - -
8 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
9 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
10 Sobic.001G033400 protein kinase domain containing protein, expressed -
11 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
12 Sobic.002G341100 bromodomain domain containing protein, expressed -
13 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
14 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
15 Sobic.002G067800 - -
16 Sobic.001G041400 PAPA-1-like conserved region family protein, expressed -
17 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
18 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
19 Sobic.006G120800 transglutaminase, putative, expressed -
20 Sobic.007G128500 expressed protein -


Gene co-expression network
sample Sobic010G021200 Sobic010G021200 Sobic007G041300 Sobic007G041300 Sobic010G021200--Sobic007G041300 Sobic006G276000 Sobic006G276000 Sobic010G021200--Sobic006G276000 Sobic006G051900 Sobic006G051900 Sobic010G021200--Sobic006G051900 Sobic010G029900 Sobic010G029900 Sobic010G021200--Sobic010G029900 Sobic010G015900 Sobic010G015900 Sobic010G021200--Sobic010G015900 Sobic006G278200 Sobic006G278200 Sobic010G021200--Sobic006G278200 Sobic001G480550 Sobic001G480550 Sobic010G021200--Sobic001G480550 Sobic007G002900 Sobic007G002900 Sobic010G021200--Sobic007G002900 Sobic010G194700 Sobic010G194700 Sobic010G021200--Sobic010G194700 Sobic007G102700 Sobic007G102700 Sobic007G041300--Sobic007G102700 Sobic001G473600 Sobic001G473600 Sobic007G041300--Sobic001G473600 Sobic007G191700 Sobic007G191700 Sobic007G041300--Sobic007G191700 Sobic004G036300 Sobic004G036300 Sobic007G041300--Sobic004G036300 Sobic009G137700 Sobic009G137700 Sobic007G041300--Sobic009G137700 Sobic003G438900 Sobic003G438900 Sobic007G041300--Sobic003G438900 Sobic004G088200 Sobic004G088200 Sobic007G041300--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic007G041300--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic007G041300--Sobic003G427100 Sobic005G046900 Sobic005G046900 Sobic006G276000--Sobic005G046900 Sobic002G262700 Sobic002G262700 Sobic006G276000--Sobic002G262700 Sobic002G389800 Sobic002G389800 Sobic006G276000--Sobic002G389800 Sobic006G276000--Sobic007G191700 Sobic006G276000--Sobic006G278200 Sobic006G276000--Sobic007G041300 Sobic006G248500 Sobic006G248500 Sobic006G276000--Sobic006G248500 Sobic003G253400 Sobic003G253400 Sobic006G276000--Sobic003G253400 Sobic002G095700 Sobic002G095700 Sobic006G276000--Sobic002G095700 Sobic007G050300 Sobic007G050300 Sobic006G051900--Sobic007G050300 Sobic006G051900--Sobic006G278200 Sobic006G120800 Sobic006G120800 Sobic006G051900--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic006G051900--Sobic010G197800 Sobic001G472100 Sobic001G472100 Sobic006G051900--Sobic001G472100 Sobic009G137900 Sobic009G137900 Sobic006G051900--Sobic009G137900 Sobic006G051900--Sobic002G095700 Sobic006G049100 Sobic006G049100 Sobic006G051900--Sobic006G049100 Sobic006G051900--Sobic005G046900 Sobic003G121300 Sobic003G121300 Sobic010G029900--Sobic003G121300 Sobic010G029900--Sobic007G191700 Sobic010G237900 Sobic010G237900 Sobic010G029900--Sobic010G237900 Sobic010G029900--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic010G029900--Sobic010G095700 Sobic005G015450 Sobic005G015450 Sobic010G029900--Sobic005G015450 Sobic006G121300 Sobic006G121300 Sobic010G029900--Sobic006G121300 Sobic007G075900 Sobic007G075900 Sobic010G029900--Sobic007G075900 Sobic010G029900--Sobic007G102700 Sobic007G042300 Sobic007G042300 Sobic010G015900--Sobic007G042300 Sobic010G015900--Sobic001G480550 Sobic001G039500 Sobic001G039500 Sobic010G015900--Sobic001G039500 Sobic010G015900--Sobic010G021200 Sobic002G029100 Sobic002G029100 Sobic010G015900--Sobic002G029100 Sobic001G501800 Sobic001G501800 Sobic010G015900--Sobic001G501800 Sobic010G154000 Sobic010G154000 Sobic010G015900--Sobic010G154000 Sobic003G159500 Sobic003G159500 Sobic010G015900--Sobic003G159500 Sobic002G272250 Sobic002G272250 Sobic010G015900--Sobic002G272250 Sobic006G278200--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic006G278200--Sobic008G073000 Sobic005G072400 Sobic005G072400 Sobic006G278200--Sobic005G072400 Sobic005G030300 Sobic005G030300 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic006G278200--Sobic009G137900 Sobic002G089900 Sobic002G089900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic002G393332 Sobic002G393332 Sobic001G480550--Sobic002G393332 Sobic003G214700 Sobic003G214700 Sobic001G480550--Sobic003G214700 Sobic009G113100 Sobic009G113100 Sobic001G480550--Sobic009G113100 Sobic001G480550--Sobic010G015900 Sobic004G155800 Sobic004G155800 Sobic001G480550--Sobic004G155800 Sobic004G065800 Sobic004G065800 Sobic001G480550--Sobic004G065800 Sobic001G480550--Sobic007G042300 Sobic001G480550--Sobic010G021200 Sobic001G367700 Sobic001G367700 Sobic001G480550--Sobic001G367700 Sobic002G309800 Sobic002G309800 Sobic007G002900--Sobic002G309800 Sobic009G070100 Sobic009G070100 Sobic007G002900--Sobic009G070100 Sobic008G136200 Sobic008G136200 Sobic007G002900--Sobic008G136200 Sobic006G191400 Sobic006G191400 Sobic007G002900--Sobic006G191400 Sobic007G052900 Sobic007G052900 Sobic007G002900--Sobic007G052900 Sobic001G039600 Sobic001G039600 Sobic007G002900--Sobic001G039600 Sobic008G165100 Sobic008G165100 Sobic007G002900--Sobic008G165100 Sobic003G197800 Sobic003G197800 Sobic007G002900--Sobic003G197800 Sobic010G056200 Sobic010G056200 Sobic007G002900--Sobic010G056200 Sobic010G194700--Sobic002G067800 Sobic001G206100 Sobic001G206100 Sobic010G194700--Sobic001G206100 Sobic010G194700--Sobic008G165100 Sobic002G151600 Sobic002G151600 Sobic010G194700--Sobic002G151600 Sobic004G213000 Sobic004G213000 Sobic010G194700--Sobic004G213000 Sobic005G059100 Sobic005G059100 Sobic010G194700--Sobic005G059100 Sobic006G013500 Sobic006G013500 Sobic010G194700--Sobic006G013500 Sobic010G194700--Sobic005G079800 Sobic010G194700--Sobic003G197800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.