Gene annotation
Transcriptome id Sobic.010G154000.1
Synonym Sb10g020580
Functional annotation zinc finger protein, putative, expressed
UniProt C5Z3M9
Pfam PF02207
Panther DB PTHR13513
NCBI CDD KOG2752; Uncharacterized conserved protein, contains N-recognin-type Zn-finger
KEGG Orthology K11979; E3 ubiquitin-protein ligase UBR7
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G23860 : PHD finger protein-related
RAP-DB (Rice) LOC_Os06g33810.1 : zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a042362
Brachypodium KQK18096
Barley HORVU7Hr1G079450.2 , HORVU7Hr1G079450.1
Wheat TraesCS7D02G328600 , TraesCS7A02G350000 , TraesCS7B02G232800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G154000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G320100 expressed protein -
2 Sobic.006G120800 transglutaminase, putative, expressed -
3 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
4 Sobic.006G049100 expressed protein -
5 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
6 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
7 Sobic.003G221500 CENP-C1, putative, expressed -
8 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
9 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
10 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
11 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
12 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
13 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
14 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
15 Sobic.006G051900 expressed protein -
16 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
17 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
18 Sobic.008G042700 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
19 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
20 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42


Gene co-expression network
sample Sobic010G154000 Sobic010G154000 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic004G320100--Sobic001G487100 Sobic004G320100--Sobic010G154000 Sobic003G132000 Sobic003G132000 Sobic004G320100--Sobic003G132000 Sobic004G320100--Sobic006G049100 Sobic003G128300 Sobic003G128300 Sobic004G320100--Sobic003G128300 Sobic006G008800 Sobic006G008800 Sobic004G320100--Sobic006G008800 Sobic006G270600 Sobic006G270600 Sobic004G320100--Sobic006G270600 Sobic003G212900 Sobic003G212900 Sobic004G320100--Sobic003G212900 Sobic003G121300 Sobic003G121300 Sobic004G320100--Sobic003G121300 Sobic001G038100 Sobic001G038100 Sobic006G120800--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic001G507400--Sobic001G038100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic001G507400--Sobic006G120800 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic001G507400--Sobic010G154000 Sobic010G077500 Sobic010G077500 Sobic006G049100--Sobic010G077500 Sobic001G042200 Sobic001G042200 Sobic006G049100--Sobic001G042200 Sobic006G049100--Sobic001G487100 Sobic007G056500 Sobic007G056500 Sobic006G049100--Sobic007G056500 Sobic001G168900 Sobic001G168900 Sobic006G049100--Sobic001G168900 Sobic004G345400 Sobic004G345400 Sobic006G049100--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic006G049100--Sobic007G187600 Sobic006G049100--Sobic003G132000 Sobic001G395100 Sobic001G395100 Sobic006G049100--Sobic001G395100 Sobic001G487100--Sobic003G132000 Sobic001G487100--Sobic004G320100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic003G221500--Sobic004G256300 Sobic002G142700 Sobic002G142700 Sobic003G221500--Sobic002G142700 Sobic003G004600 Sobic003G004600 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic003G221500--Sobic010G154000 Sobic003G222700 Sobic003G222700 Sobic003G221500--Sobic003G222700 Sobic009G258400--Sobic001G168900 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic004G212700--Sobic003G274400 Sobic004G212700--Sobic010G154000 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.