Gene annotation
Transcriptome id Sobic.008G042700.4,Sobic.008G042700.3
Synonym Sb08g003670, ATE2FA, E2F3
Functional annotation E2F family transcription factor protein, putative, expressed
UniProt A0A1Z5R5C3 , A0A1Z5R4P8
Pfam PF02319 PF16421
Panther DB PTHR12081 PTHR12081:SF48
NCBI CDD KOG2577; Transcription factor E2F/dimerization partner (TDP)
KEGG Orthology K06620; transcription factor E2F3
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005667transcription regulator complex GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G36010 : E2F transcription factor 3
RAP-DB (Rice) LOC_Os12g06200.1 : E2F family transcription factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a049600 , Zm00025a053948
Brachypodium PNT65411 , PNT65412 , KQJ92171 , KQJ92170
Barley HORVU5Hr1G040190.3 , HORVU5Hr1G040190.5 , HORVU5Hr1G040190.42 , HORVU5Hr1G040190.40 , HORVU5Hr1G040190.41 , HORVU5Hr1G040190.37 , HORVU5Hr1G040190.39 , HORVU5Hr1G040190.33 , HORVU5Hr1G040190.32 , HORVU5Hr1G040190.31 , HORVU5Hr1G040190.30 , HORVU5Hr1G040190.36 , HORVU5Hr1G040190.35 , HORVU5Hr1G040190.34 , HORVU5Hr1G040190.38 , HORVU5Hr1G040190.20 , HORVU5Hr1G040190.21 , HORVU5Hr1G040190.22 , HORVU5Hr1G040190.23 , HORVU5Hr1G040190.24 , HORVU5Hr1G040190.25 , HORVU5Hr1G040190.26 , HORVU5Hr1G040190.27 , HORVU5Hr1G040190.28 , HORVU5Hr1G040190.29 , HORVU5Hr1G040190.15 , HORVU5Hr1G040190.14 , HORVU5Hr1G040190.17 , HORVU5Hr1G040190.16 , HORVU5Hr1G040190.10 , HORVU5Hr1G040190.13 , HORVU5Hr1G040190.12 , HORVU5Hr1G040190.19 , HORVU5Hr1G040190.18 , HORVU5Hr1G040190.1 , HORVU5Hr1G040190.2 , HORVU5Hr1G040190.4 , HORVU5Hr1G040190.7 , HORVU5Hr1G040190.6 , HORVU5Hr1G040190.9 , HORVU5Hr1G040190.8
Wheat TraesCS5B02G125100 , TraesCS5D02G133600 , TraesCS5A02G125900 , TraesCS5A02G125900 , TraesCS5A02G125900
Populus -


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cDNA sequences
Sobic.008G042700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
2 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
3 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
4 Sobic.004G272900 expressed protein -
5 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
7 Sobic.003G026900 expressed protein -
8 Sobic.008G045800 PHD-finger family protein, expressed -
9 Sobic.003G224700 glycosyltransferase family protein 1, putative, expressed -
10 Sobic.003G221500 CENP-C1, putative, expressed -
11 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
12 Sobic.004G207000 fasciated ear2, putative, expressed -
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
15 Sobic.001G171100 expressed protein -
16 Sobic.007G032400 "homolog of maize FIE2 (WD40, repressor of endosperm development in the absence of fertilization)"(PubMedID : 12566582)@WD domain, G-beta repeat domain containing protein, expressed K11462: polycomb protein EED
17 Sobic.006G008800 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
18 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
20 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7


Gene co-expression network
sample Sobic008G042700 Sobic008G042700 Sobic010G154000 Sobic010G154000 Sobic008G042700--Sobic010G154000 Sobic010G236200 Sobic010G236200 Sobic008G042700--Sobic010G236200 Sobic001G005800 Sobic001G005800 Sobic008G042700--Sobic001G005800 Sobic004G272900 Sobic004G272900 Sobic008G042700--Sobic004G272900 Sobic001G157600 Sobic001G157600 Sobic008G042700--Sobic001G157600 Sobic009G006900 Sobic009G006900 Sobic008G042700--Sobic009G006900 Sobic003G026900 Sobic003G026900 Sobic008G042700--Sobic003G026900 Sobic008G045800 Sobic008G045800 Sobic008G042700--Sobic008G045800 Sobic003G224700 Sobic003G224700 Sobic008G042700--Sobic003G224700 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic009G032200 Sobic009G032200 Sobic010G236200--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic004G043750 Sobic004G043750 Sobic010G236200--Sobic004G043750 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic007G125700 Sobic007G125700 Sobic010G236200--Sobic007G125700 Sobic002G253900 Sobic002G253900 Sobic001G005800--Sobic002G253900 Sobic001G005800--Sobic008G045800 Sobic002G056000 Sobic002G056000 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic009G148000 Sobic009G148000 Sobic001G005800--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic004G014100 Sobic004G014100 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic002G403200 Sobic002G403200 Sobic004G272900--Sobic002G403200 Sobic008G115600 Sobic008G115600 Sobic004G272900--Sobic008G115600 Sobic003G415100 Sobic003G415100 Sobic004G272900--Sobic003G415100 Sobic010G256200 Sobic010G256200 Sobic004G272900--Sobic010G256200 Sobic004G272900--Sobic001G157600 Sobic002G014700 Sobic002G014700 Sobic004G272900--Sobic002G014700 Sobic002G306600 Sobic002G306600 Sobic004G272900--Sobic002G306600 Sobic003G140900 Sobic003G140900 Sobic004G272900--Sobic003G140900 Sobic006G261100 Sobic006G261100 Sobic004G272900--Sobic006G261100 Sobic001G157600--Sobic010G256200 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic001G157600--Sobic010G154000 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic004G207000 Sobic004G207000 Sobic009G006900--Sobic004G207000 Sobic009G006900--Sobic010G149600 Sobic006G272800 Sobic006G272800 Sobic009G006900--Sobic006G272800 Sobic002G430900 Sobic002G430900 Sobic009G006900--Sobic002G430900 Sobic002G196500 Sobic002G196500 Sobic009G006900--Sobic002G196500 Sobic005G062600 Sobic005G062600 Sobic009G006900--Sobic005G062600 Sobic002G302600 Sobic002G302600 Sobic009G006900--Sobic002G302600 Sobic002G017900 Sobic002G017900 Sobic009G006900--Sobic002G017900 Sobic001G540700 Sobic001G540700 Sobic009G006900--Sobic001G540700 Sobic004G075700 Sobic004G075700 Sobic003G026900--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic003G026900--Sobic005G131800 Sobic009G132650 Sobic009G132650 Sobic003G026900--Sobic009G132650 Sobic001G067000 Sobic001G067000 Sobic003G026900--Sobic001G067000 Sobic006G186300 Sobic006G186300 Sobic003G026900--Sobic006G186300 Sobic006G061100 Sobic006G061100 Sobic003G026900--Sobic006G061100 Sobic002G230400 Sobic002G230400 Sobic003G026900--Sobic002G230400 Sobic006G161300 Sobic006G161300 Sobic003G026900--Sobic006G161300 Sobic005G176875 Sobic005G176875 Sobic003G026900--Sobic005G176875 Sobic008G045800--Sobic001G005800 Sobic008G045800--Sobic009G257500 Sobic008G045800--Sobic004G014100 Sobic010G262900 Sobic010G262900 Sobic008G045800--Sobic010G262900 Sobic010G180200 Sobic010G180200 Sobic008G045800--Sobic010G180200 Sobic008G045800--Sobic006G200901 Sobic008G045800--Sobic002G230400 Sobic008G045800--Sobic010G236200 Sobic008G045800--Sobic004G075700 Sobic001G123100 Sobic001G123100 Sobic003G224700--Sobic001G123100 Sobic003G224700--Sobic004G145300 Sobic009G254000 Sobic009G254000 Sobic003G224700--Sobic009G254000 Sobic001G123300 Sobic001G123300 Sobic003G224700--Sobic001G123300 Sobic007G106300 Sobic007G106300 Sobic003G224700--Sobic007G106300 Sobic003G224700--Sobic002G343000 Sobic002G284100 Sobic002G284100 Sobic003G224700--Sobic002G284100 Sobic001G369800 Sobic001G369800 Sobic003G224700--Sobic001G369800 Sobic003G224700--Sobic006G200901
Octagon: transcription factors


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