Gene annotation
Transcriptome id Sobic.007G032400.2
Synonym FIE1, FIE, FIS3, SbFIE, Sb07g002810, Fertilization-Independent Endosperm
Functional annotation "homolog of maize FIE2 (WD40, repressor of endosperm development in the absence of fertilization)" (PubMedID : 12566582)
WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5R8Y0 , Q7FS94
Pfam PF00400
Panther DB PTHR10253
NCBI CDD KOG1034; Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily
KEGG Orthology K11462; polycomb protein EED
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G20740 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g04270.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030161 , Zm00025a055278
Brachypodium PNT66596 , PNT66827 , KQJ94988 , KQJ94989 , KQJ94994 , PNT70216 , KQJ95478
Barley HORVU7Hr1G073410.4 , HORVU7Hr1G073410.5 , HORVU7Hr1G073410.6 , HORVU7Hr1G073410.7 , HORVU7Hr1G073410.1 , HORVU7Hr1G073410.2 , HORVU7Hr1G073410.3 , HORVU7Hr1G073410.8 , HORVU7Hr1G073410.9 , HORVU7Hr1G073410.10 , HORVU7Hr1G073410.11
Wheat TraesCS7D02G305100 , TraesCS7A02G308300 , TraesCS7A02G089100 , TraesCS7A02G089200 , TraesCS4A02G388400 , TraesCS7D02G084500
Populus -


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cDNA sequences
Sobic.007G032400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
2 Sobic.002G056000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
3 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
4 Sobic.008G042700 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
5 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
7 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
8 Sobic.009G057200 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
9 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
10 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
12 Sobic.006G217500 B3 DNA binding domain containing protein, expressed -
13 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
14 Sobic.003G275800 expressed protein -
15 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
16 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
17 Sobic.001G462600 retinoblastoma-binding protein-like, putative, expressed K14961: RBBP5, SWD1, COMPASS component SWD1
18 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
19 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
20 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase


Gene co-expression network
sample Sobic007G032400 Sobic007G032400 Sobic001G005800 Sobic001G005800 Sobic007G032400--Sobic001G005800 Sobic002G056000 Sobic002G056000 Sobic007G032400--Sobic002G056000 Sobic004G242200 Sobic004G242200 Sobic007G032400--Sobic004G242200 Sobic008G042700 Sobic008G042700 Sobic007G032400--Sobic008G042700 Sobic001G157600 Sobic001G157600 Sobic007G032400--Sobic001G157600 Sobic001G373000 Sobic001G373000 Sobic007G032400--Sobic001G373000 Sobic010G141600 Sobic010G141600 Sobic007G032400--Sobic010G141600 Sobic009G057200 Sobic009G057200 Sobic007G032400--Sobic009G057200 Sobic009G030400 Sobic009G030400 Sobic007G032400--Sobic009G030400 Sobic002G253900 Sobic002G253900 Sobic001G005800--Sobic002G253900 Sobic008G045800 Sobic008G045800 Sobic001G005800--Sobic008G045800 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic009G148000 Sobic009G148000 Sobic001G005800--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic004G014100 Sobic004G014100 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic002G056000--Sobic001G005800 Sobic001G123100 Sobic001G123100 Sobic002G056000--Sobic001G123100 Sobic002G056000--Sobic002G253900 Sobic001G507000 Sobic001G507000 Sobic002G056000--Sobic001G507000 Sobic002G056000--Sobic009G148000 Sobic003G103701 Sobic003G103701 Sobic002G056000--Sobic003G103701 Sobic009G254000 Sobic009G254000 Sobic002G056000--Sobic009G254000 Sobic002G006100 Sobic002G006100 Sobic002G056000--Sobic002G006100 Sobic002G254800 Sobic002G254800 Sobic002G056000--Sobic002G254800 Sobic002G420400 Sobic002G420400 Sobic004G242200--Sobic002G420400 Sobic001G456400 Sobic001G456400 Sobic004G242200--Sobic001G456400 Sobic005G036200 Sobic005G036200 Sobic004G242200--Sobic005G036200 Sobic009G002200 Sobic009G002200 Sobic004G242200--Sobic009G002200 Sobic001G375800 Sobic001G375800 Sobic004G242200--Sobic001G375800 Sobic007G192200 Sobic007G192200 Sobic004G242200--Sobic007G192200 Sobic004G339900 Sobic004G339900 Sobic004G242200--Sobic004G339900 Sobic010G152000 Sobic010G152000 Sobic004G242200--Sobic010G152000 Sobic004G071050 Sobic004G071050 Sobic004G242200--Sobic004G071050 Sobic010G154000 Sobic010G154000 Sobic008G042700--Sobic010G154000 Sobic010G236200 Sobic010G236200 Sobic008G042700--Sobic010G236200 Sobic008G042700--Sobic001G005800 Sobic004G272900 Sobic004G272900 Sobic008G042700--Sobic004G272900 Sobic008G042700--Sobic001G157600 Sobic009G006900 Sobic009G006900 Sobic008G042700--Sobic009G006900 Sobic003G026900 Sobic003G026900 Sobic008G042700--Sobic003G026900 Sobic008G042700--Sobic008G045800 Sobic003G224700 Sobic003G224700 Sobic008G042700--Sobic003G224700 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic010G141600--Sobic009G030400 Sobic002G208400 Sobic002G208400 Sobic010G141600--Sobic002G208400 Sobic010G141600--Sobic009G002000 Sobic006G193500 Sobic006G193500 Sobic010G141600--Sobic006G193500 Sobic010G141600--Sobic001G373000 Sobic010G141600--Sobic001G115500 Sobic010G141600--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic010G141600--Sobic009G113100 Sobic002G263200 Sobic002G263200 Sobic010G141600--Sobic002G263200 Sobic009G057200--Sobic001G115500 Sobic009G057200--Sobic001G436300 Sobic003G298900 Sobic003G298900 Sobic009G057200--Sobic003G298900 Sobic001G013100 Sobic001G013100 Sobic009G057200--Sobic001G013100 Sobic004G015300 Sobic004G015300 Sobic009G057200--Sobic004G015300 Sobic003G217500 Sobic003G217500 Sobic009G057200--Sobic003G217500 Sobic002G317600 Sobic002G317600 Sobic009G057200--Sobic002G317600 Sobic009G057200--Sobic001G123100 Sobic001G465500 Sobic001G465500 Sobic009G057200--Sobic001G465500 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600
Octagon: transcription factors


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