Gene annotation
Transcriptome id Sobic.002G339800.1,Sobic.002G339800.2
Synonym VAL1, Sb02g036430, HSI2
Functional annotation B3 DNA binding domain containing protein, putative, expressed
UniProt A0A1B6QF04
Pfam PF07496 PF02362
Panther DB PTHR23336 PTHR23336:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G32010 : HSI2-like 1
RAP-DB (Rice) LOC_Os07g37610.1 : B3 DNA binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014912 , Zm00025a048396
Brachypodium KQK15759 , KQK15758 , PNT74937 , PNT74936
Barley HORVU2Hr1G040410.2 , HORVU2Hr1G040400.1 , HORVU2Hr1G040410.5 , HORVU2Hr1G040410.4 , HORVU2Hr1G040410.3
Wheat TraesCS2B02G231800 , TraesCS2A02G204300 , TraesCS2A02G204300 , TraesCS2A02G204300 , TraesCS2D02G211600 , TraesCS2D02G211600 , TraesCS2D02G211600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
2 Sobic.002G177500 expressed protein -
3 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
4 Sobic.002G263200 expressed protein -
5 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1
6 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
7 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
8 Sobic.001G168100 OsFBD13 - F-box and FBD domain containing protein, expressed -
9 Sobic.010G063566 - K11111: TERF2, telomeric repeat-binding factor 2
10 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
11 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
12 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
13 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
14 Sobic.001G023800 expressed protein -
15 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
16 Sobic.002G430900 PWWP domain containing protein, expressed -
17 Sobic.010G013500 growth-regulating factor, putative, expressed -
18 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
19 Sobic.007G075100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
20 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -


Gene co-expression network
sample Sobic002G339800 Sobic002G339800 Sobic002G223300 Sobic002G223300 Sobic002G339800--Sobic002G223300 Sobic002G177500 Sobic002G177500 Sobic002G339800--Sobic002G177500 Sobic002G017900 Sobic002G017900 Sobic002G339800--Sobic002G017900 Sobic002G263200 Sobic002G263200 Sobic002G339800--Sobic002G263200 Sobic009G045300 Sobic009G045300 Sobic002G339800--Sobic009G045300 Sobic001G013300 Sobic001G013300 Sobic002G339800--Sobic001G013300 Sobic004G285000 Sobic004G285000 Sobic002G339800--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G339800--Sobic001G168100 Sobic010G063566 Sobic010G063566 Sobic002G339800--Sobic010G063566 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G223300--Sobic002G339800 Sobic001G370300 Sobic001G370300 Sobic002G177500--Sobic001G370300 Sobic002G177500--Sobic004G285000 Sobic002G177500--Sobic001G168100 Sobic003G436600 Sobic003G436600 Sobic002G177500--Sobic003G436600 Sobic002G177500--Sobic001G013300 Sobic002G177500--Sobic002G223300 Sobic002G399200 Sobic002G399200 Sobic002G177500--Sobic002G399200 Sobic006G226300 Sobic006G226300 Sobic002G177500--Sobic006G226300 Sobic002G177500--Sobic009G151200 Sobic002G430900 Sobic002G430900 Sobic002G017900--Sobic002G430900 Sobic004G198900 Sobic004G198900 Sobic002G017900--Sobic004G198900 Sobic005G120700 Sobic005G120700 Sobic002G017900--Sobic005G120700 Sobic007G125700 Sobic007G125700 Sobic002G017900--Sobic007G125700 Sobic003G274400 Sobic003G274400 Sobic002G017900--Sobic003G274400 Sobic009G006900 Sobic009G006900 Sobic002G017900--Sobic009G006900 Sobic002G017900--Sobic002G177500 Sobic002G017900--Sobic002G339800 Sobic004G207000 Sobic004G207000 Sobic002G017900--Sobic004G207000 Sobic001G373000 Sobic001G373000 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic002G263200--Sobic001G013300 Sobic001G346900 Sobic001G346900 Sobic002G263200--Sobic001G346900 Sobic004G330600 Sobic004G330600 Sobic009G045300--Sobic004G330600 Sobic008G052300 Sobic008G052300 Sobic009G045300--Sobic008G052300 Sobic010G175000 Sobic010G175000 Sobic009G045300--Sobic010G175000 Sobic009G012600 Sobic009G012600 Sobic009G045300--Sobic009G012600 Sobic009G188900 Sobic009G188900 Sobic009G045300--Sobic009G188900 Sobic006G016700 Sobic006G016700 Sobic009G045300--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic009G045300--Sobic006G275500 Sobic003G104100 Sobic003G104100 Sobic009G045300--Sobic003G104100 Sobic005G163400 Sobic005G163400 Sobic009G045300--Sobic005G163400 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic004G285000--Sobic001G013300 Sobic001G168100--Sobic002G177500 Sobic001G168100--Sobic001G013300 Sobic001G168100--Sobic004G285000 Sobic001G168100--Sobic002G223300 Sobic003G223500 Sobic003G223500 Sobic001G168100--Sobic003G223500 Sobic007G043400 Sobic007G043400 Sobic001G168100--Sobic007G043400 Sobic001G168100--Sobic003G408300 Sobic001G168100--Sobic002G339800 Sobic001G168100--Sobic001G023800 Sobic010G063566--Sobic002G177500 Sobic002G256800 Sobic002G256800 Sobic010G063566--Sobic002G256800 Sobic001G268700 Sobic001G268700 Sobic010G063566--Sobic001G268700 Sobic006G111200 Sobic006G111200 Sobic010G063566--Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic010G063566--Sobic001G453500 Sobic010G063566--Sobic002G339800 Sobic010G063566--Sobic001G168100 Sobic010G063566--Sobic002G223300 Sobic010G063566--Sobic003G223500
Octagon: transcription factors


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