Gene annotation
Transcriptome id Sobic.009G045300.1,Sobic.009G045300.2
Synonym Sb09g003870, TIR1
Functional annotation OsFBL21 - F-box domain and LRR containing protein, expressed
UniProt C5Z046
Pfam PF00646
Panther DB PTHR24006 PTHR24006:SF505
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K14485; transport inhibitor response 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G62980 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os05g05800.1 : OsFBL21 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a038072
Brachypodium KQK07484
Barley HORVU1Hr1G021550.4 , HORVU1Hr1G021550.1 , HORVU1Hr1G021550.2 , HORVU1Hr1G021550.3
Wheat TraesCS1B02G119100 , TraesCS1D02G099900 , TraesCS1A02G091300
Populus PNT50833 , PNT04642


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cDNA sequences
Sobic.009G045300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
2 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
3 Sobic.010G175000 expressed protein -
4 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
6 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
7 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
8 Sobic.003G104100 expressed protein -
9 Sobic.005G163400 dnaJ domain containing protein, expressed -
10 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
11 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.002G168000 expressed protein -
13 Sobic.009G077300 protein kinase, putative, expressed -
14 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
15 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
16 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
17 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
18 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
19 Sobic.008G063600 glycosyl hydrolase family protein 27, putative, expressed -
20 Sobic.001G104500 growth-regulating factor, putative, expressed -


Gene co-expression network
sample Sobic009G045300 Sobic009G045300 Sobic004G330600 Sobic004G330600 Sobic009G045300--Sobic004G330600 Sobic008G052300 Sobic008G052300 Sobic009G045300--Sobic008G052300 Sobic010G175000 Sobic010G175000 Sobic009G045300--Sobic010G175000 Sobic009G012600 Sobic009G012600 Sobic009G045300--Sobic009G012600 Sobic009G188900 Sobic009G188900 Sobic009G045300--Sobic009G188900 Sobic006G016700 Sobic006G016700 Sobic009G045300--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic009G045300--Sobic006G275500 Sobic003G104100 Sobic003G104100 Sobic009G045300--Sobic003G104100 Sobic005G163400 Sobic005G163400 Sobic009G045300--Sobic005G163400 Sobic007G043400 Sobic007G043400 Sobic004G330600--Sobic007G043400 Sobic008G090000 Sobic008G090000 Sobic004G330600--Sobic008G090000 Sobic004G330600--Sobic006G275500 Sobic006G094100 Sobic006G094100 Sobic004G330600--Sobic006G094100 Sobic004G330600--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic004G330600--Sobic001G290500 Sobic004G330600--Sobic009G045300 Sobic002G133000 Sobic002G133000 Sobic004G330600--Sobic002G133000 Sobic006G281900 Sobic006G281900 Sobic004G330600--Sobic006G281900 Sobic004G269100 Sobic004G269100 Sobic008G052300--Sobic004G269100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic008G052300--Sobic005G163400 Sobic002G259200 Sobic002G259200 Sobic008G052300--Sobic002G259200 Sobic008G052300--Sobic006G016700 Sobic005G153000 Sobic005G153000 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500 Sobic004G192500 Sobic004G192500 Sobic010G175000--Sobic004G192500 Sobic010G257000 Sobic010G257000 Sobic010G175000--Sobic010G257000 Sobic006G226000 Sobic006G226000 Sobic010G175000--Sobic006G226000 Sobic010G175000--Sobic009G188900 Sobic010G175000--Sobic006G281900 Sobic010G175000--Sobic006G275500 Sobic010G175000--Sobic006G016700 Sobic002G168000 Sobic002G168000 Sobic010G175000--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic010G175000--Sobic002G055800 Sobic007G050800 Sobic007G050800 Sobic009G012600--Sobic007G050800 Sobic005G045700 Sobic005G045700 Sobic009G012600--Sobic005G045700 Sobic009G012600--Sobic006G226000 Sobic007G192200 Sobic007G192200 Sobic009G012600--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic009G012600--Sobic009G002200 Sobic005G036200 Sobic005G036200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic006G262501 Sobic006G262501 Sobic009G012600--Sobic006G262501 Sobic008G191850 Sobic008G191850 Sobic009G012600--Sobic008G191850 Sobic009G188900--Sobic002G168000 Sobic010G250400 Sobic010G250400 Sobic009G188900--Sobic010G250400 Sobic009G188900--Sobic006G281900 Sobic001G199500 Sobic001G199500 Sobic009G188900--Sobic001G199500 Sobic009G188900--Sobic006G275500 Sobic001G425700 Sobic001G425700 Sobic009G188900--Sobic001G425700 Sobic009G188900--Sobic001G290500 Sobic009G188900--Sobic005G153000 Sobic007G187700 Sobic007G187700 Sobic009G188900--Sobic007G187700 Sobic003G147500 Sobic003G147500 Sobic006G016700--Sobic003G147500 Sobic006G016700--Sobic006G275500 Sobic002G256900 Sobic002G256900 Sobic006G016700--Sobic002G256900 Sobic006G016700--Sobic006G226000 Sobic006G016700--Sobic007G050800 Sobic006G016700--Sobic002G168000 Sobic006G016700--Sobic007G187700 Sobic006G016700--Sobic008G052300 Sobic006G016700--Sobic005G153000 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic001G395200 Sobic001G395200 Sobic003G104100--Sobic001G395200 Sobic003G104100--Sobic008G052300 Sobic003G104100--Sobic005G163400 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic005G163400--Sobic010G024500 Sobic001G390400 Sobic001G390400 Sobic005G163400--Sobic001G390400 Sobic005G163400--Sobic009G077300 Sobic005G163400--Sobic003G104100 Sobic005G163400--Sobic008G052300 Sobic008G190000 Sobic008G190000 Sobic005G163400--Sobic008G190000 Sobic001G054700 Sobic001G054700 Sobic005G163400--Sobic001G054700 Sobic005G163400--Sobic005G153000 Sobic002G050700 Sobic002G050700 Sobic005G163400--Sobic002G050700
Octagon: transcription factors


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