Gene annotation
Transcriptome id Sobic.006G275500.1
Synonym Sb06g033680, PRAF1
Functional annotation regulator of chromosome condensation, putative, expressed
UniProt C5YB03
Pfam PF01363 PF13713 PF08381 PF00415
Panther DB PTHR22870 PTHR22870:SF194
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42140 : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
RAP-DB (Rice) LOC_Os04g58960.1 : regulator of chromosome condensation, putative, expressed
MaizeGDB (Corn) Zm00025a010489
Brachypodium KQJ85412 , KQJ85413 , KQJ85411
Barley HORVU2Hr1G124270.21 , HORVU2Hr1G124270.20 , HORVU2Hr1G124270.23 , HORVU2Hr1G124270.22 , HORVU2Hr1G124270.25 , HORVU2Hr1G124270.24 , HORVU2Hr1G124270.26 , HORVU2Hr1G124270.8 , HORVU2Hr1G124270.9 , HORVU2Hr1G124270.6 , HORVU2Hr1G124270.7 , HORVU2Hr1G124270.4 , HORVU2Hr1G124270.5 , HORVU2Hr1G124270.2 , HORVU2Hr1G124270.3 , HORVU2Hr1G124270.1 , HORVU3Hr1G108180.6 , HORVU3Hr1G108180.5 , HORVU3Hr1G108180.4 , HORVU3Hr1G108180.3 , HORVU3Hr1G108180.2 , HORVU3Hr1G108180.1 , HORVU2Hr1G124270.14 , HORVU2Hr1G124270.15 , HORVU2Hr1G124270.16 , HORVU2Hr1G124270.17 , HORVU2Hr1G124270.10 , HORVU2Hr1G124270.11 , HORVU2Hr1G124270.12 , HORVU2Hr1G124270.13 , HORVU2Hr1G124270.18 , HORVU2Hr1G124270.19
Wheat TraesCS2B02G609200 , TraesCS2D02G589800 , TraesCS2A02G581400
Populus PNT37461 , PNT37460 , PNT48279 , PNT48278


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.001G104500 growth-regulating factor, putative, expressed -
3 Sobic.002G168000 expressed protein -
4 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
5 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
6 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
7 Sobic.009G077300 protein kinase, putative, expressed -
8 Sobic.006G094100 expressed protein -
9 Sobic.009G146250 - -
10 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
11 Sobic.004G052200 expressed protein -
12 Sobic.006G196600 expressed protein -
13 Sobic.007G218100 transmembrane receptor, putative, expressed -
14 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
15 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
16 Sobic.005G153000 agenet domain containing protein, expressed -
17 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
18 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
19 Sobic.006G221300 expressed protein -
20 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -


Gene co-expression network
sample Sobic006G275500 Sobic006G275500 Sobic006G016700 Sobic006G016700 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic002G168000 Sobic002G168000 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic007G187700 Sobic007G187700 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic006G016700--Sobic003G147500 Sobic006G016700--Sobic006G275500 Sobic002G256900 Sobic002G256900 Sobic006G016700--Sobic002G256900 Sobic006G226000 Sobic006G226000 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic006G016700--Sobic002G168000 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic004G282601 Sobic004G282601 Sobic001G104500--Sobic004G282601 Sobic001G104500--Sobic006G275500 Sobic001G104500--Sobic007G187700 Sobic004G317000 Sobic004G317000 Sobic001G104500--Sobic004G317000 Sobic001G104500--Sobic002G256900 Sobic001G104500--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic001G104500--Sobic002G055800 Sobic001G104500--Sobic006G016700 Sobic010G037901 Sobic010G037901 Sobic001G104500--Sobic010G037901 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic003G147500--Sobic006G016700 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic003G147500--Sobic009G146250 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic007G187700--Sobic004G317000 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic008G090000--Sobic006G275500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic008G090000--Sobic009G146250 Sobic008G090000--Sobic002G168000 Sobic008G090000--Sobic009G188900 Sobic002G362200 Sobic002G362200 Sobic008G090000--Sobic002G362200 Sobic009G077300--Sobic005G153000 Sobic006G221300 Sobic006G221300 Sobic009G077300--Sobic006G221300 Sobic001G054700 Sobic001G054700 Sobic009G077300--Sobic001G054700 Sobic005G163400 Sobic005G163400 Sobic009G077300--Sobic005G163400 Sobic009G077300--Sobic002G168000 Sobic002G050700 Sobic002G050700 Sobic009G077300--Sobic002G050700 Sobic009G077300--Sobic004G282601 Sobic009G143200 Sobic009G143200 Sobic009G077300--Sobic009G143200 Sobic009G077300--Sobic007G187700 Sobic001G290500 Sobic001G290500 Sobic006G094100--Sobic001G290500 Sobic006G094100--Sobic006G275500 Sobic001G140700 Sobic001G140700 Sobic006G094100--Sobic001G140700 Sobic009G109300 Sobic009G109300 Sobic006G094100--Sobic009G109300 Sobic004G330600 Sobic004G330600 Sobic006G094100--Sobic004G330600 Sobic006G094100--Sobic009G188900 Sobic002G230800 Sobic002G230800 Sobic006G094100--Sobic002G230800 Sobic006G094100--Sobic010G250400 Sobic006G196600 Sobic006G196600 Sobic006G094100--Sobic006G196600 Sobic004G156200 Sobic004G156200 Sobic009G146250--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic009G146250--Sobic006G195500 Sobic009G146250--Sobic002G021200 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic009G146250--Sobic007G187700 Sobic001G304800 Sobic001G304800 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic009G146250--Sobic001G377700
Octagon: transcription factors


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