Gene annotation
Transcriptome id Sobic.006G016700.1,Sobic.006G016700.2
Synonym
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt C6JSQ5 , A0A1Z5RBK3 , A0A1Z5RBJ9
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF13 PTHR23079:SF13 PTHR23079
NCBI CDD KOG0988; RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT2G19930 : RNA-dependent RNA polymerase family protein
RAP-DB (Rice) LOC_Os01g10140.2 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a012343 , Zm00025a012332
Brachypodium -
Barley -
Wheat TraesCS3A02G311300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
2 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
3 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
4 Sobic.006G226000 expressed protein -
5 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
6 Sobic.002G168000 expressed protein -
7 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
8 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
9 Sobic.005G153000 agenet domain containing protein, expressed -
10 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
11 Sobic.001G104500 growth-regulating factor, putative, expressed -
12 Sobic.004G123200 MYB family transcription factor, putative, expressed -
13 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
14 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.003G350400 thaumatin, putative, expressed -
16 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.009G077300 protein kinase, putative, expressed -
18 Sobic.009G146250 - -
19 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
20 Sobic.009G224300 expressed protein -


Gene co-expression network
sample Sobic006G016700 Sobic006G016700 Sobic003G147500 Sobic003G147500 Sobic006G016700--Sobic003G147500 Sobic006G275500 Sobic006G275500 Sobic006G016700--Sobic006G275500 Sobic002G256900 Sobic002G256900 Sobic006G016700--Sobic002G256900 Sobic006G226000 Sobic006G226000 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic002G168000 Sobic002G168000 Sobic006G016700--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic003G147500--Sobic006G016700 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic008G090000 Sobic008G090000 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic009G146250 Sobic009G146250 Sobic003G147500--Sobic009G146250 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic006G275500--Sobic009G146250 Sobic002G256900--Sobic006G226000 Sobic003G086800 Sobic003G086800 Sobic002G256900--Sobic003G086800 Sobic002G256900--Sobic004G123200 Sobic004G347500 Sobic004G347500 Sobic002G256900--Sobic004G347500 Sobic007G160400 Sobic007G160400 Sobic002G256900--Sobic007G160400 Sobic009G012500 Sobic009G012500 Sobic002G256900--Sobic009G012500 Sobic002G240000 Sobic002G240000 Sobic002G256900--Sobic002G240000 Sobic001G203350 Sobic001G203350 Sobic002G256900--Sobic001G203350 Sobic005G021000 Sobic005G021000 Sobic002G256900--Sobic005G021000 Sobic009G031800 Sobic009G031800 Sobic006G226000--Sobic009G031800 Sobic006G226000--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic006G226000--Sobic002G256900 Sobic006G226000--Sobic004G123200 Sobic006G226000--Sobic003G086800 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400 Sobic009G002200 Sobic009G002200 Sobic007G050800--Sobic009G002200 Sobic007G050800--Sobic006G016700 Sobic008G118100 Sobic008G118100 Sobic007G050800--Sobic008G118100 Sobic007G050800--Sobic006G226000 Sobic007G050800--Sobic002G168000 Sobic007G050800--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic007G050800--Sobic006G135800 Sobic007G050800--Sobic007G187700 Sobic009G012600 Sobic009G012600 Sobic007G050800--Sobic009G012600 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic004G269100 Sobic004G269100 Sobic008G052300--Sobic004G269100 Sobic003G104100 Sobic003G104100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic005G163400 Sobic005G163400 Sobic008G052300--Sobic005G163400 Sobic002G259200 Sobic002G259200 Sobic008G052300--Sobic002G259200 Sobic008G052300--Sobic006G016700 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500 Sobic005G153000--Sobic009G077300 Sobic005G153000--Sobic002G168000 Sobic005G153000--Sobic004G282601 Sobic005G153000--Sobic010G037901 Sobic003G290400 Sobic003G290400 Sobic005G153000--Sobic003G290400 Sobic005G153000--Sobic007G187700 Sobic005G153000--Sobic006G221300 Sobic003G129500 Sobic003G129500 Sobic005G153000--Sobic003G129500 Sobic005G196600 Sobic005G196600 Sobic005G153000--Sobic005G196600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.