Gene annotation
Transcriptome id Sobic.004G330600.1
Synonym Sb04g035950
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt C5XUG8
Pfam PF00288
Panther DB PTHR10977 PTHR10977:SF3
NCBI CDD -
KEGG Orthology K01597; MVD, diphosphomevalonate decarboxylase
Gene Ontology GO:0005524; ATP binding GO:0016831carboxy-lyase activity GO:0008299isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G54250 : GHMP kinase family protein
RAP-DB (Rice) LOC_Os02g01920.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a008071 , Zm00025a022470 , Zm00025a009909
Brachypodium KQK14291 , KQK11716
Barley HORVU3Hr1G113200.8 , HORVU3Hr1G113200.9 , HORVU3Hr1G113200.4 , HORVU3Hr1G113200.5 , HORVU3Hr1G113200.6 , HORVU3Hr1G113200.7 , HORVU3Hr1G113200.1 , HORVU3Hr1G113200.2 , HORVU3Hr1G113200.3 , HORVU3Hr1G113200.18 , HORVU3Hr1G113200.16 , HORVU3Hr1G113200.17 , HORVU3Hr1G113200.14 , HORVU3Hr1G113200.15 , HORVU3Hr1G113200.12 , HORVU3Hr1G113200.13 , HORVU3Hr1G113200.10 , HORVU3Hr1G113200.11 , HORVU3Hr1G113200.19 , HORVU5Hr1G106460.10 , HORVU3Hr1G113200.27 , HORVU3Hr1G113200.26 , HORVU3Hr1G113200.25 , HORVU3Hr1G113200.24 , HORVU3Hr1G113200.23 , HORVU3Hr1G113200.22 , HORVU3Hr1G113200.21 , HORVU3Hr1G113200.20 , HORVU3Hr1G113200.29 , HORVU3Hr1G113200.28 , HORVU5Hr1G106460.1 , HORVU5Hr1G106460.2 , HORVU5Hr1G106460.3 , HORVU5Hr1G106460.4 , HORVU5Hr1G106460.5 , HORVU5Hr1G106460.6 , HORVU5Hr1G106460.7 , HORVU5Hr1G106460.8 , HORVU5Hr1G106460.9 , HORVU3Hr1G113200.30 , HORVU3Hr1G113200.31 , HORVU3Hr1G113200.32 , HORVU3Hr1G113200.33
Wheat TraesCS5A02G442800 , TraesCS5B02G447300 , TraesCS7D02G385200 , TraesCS2B02G063600 , TraesCS7A02G100000 , TraesCS7A02G100000 , TraesCS4B02G349700 , TraesCS4B02G349700 , TraesCS7A02G156400 , TraesCS3D02G525300 , TraesCS5D02G450200 , TraesCS3B02G585400 , TraesCS3A02G517800 , TraesCS3A02G517800
Populus -


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cDNA sequences
Sobic.004G330600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G043400 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
2 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
3 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
4 Sobic.006G094100 expressed protein -
5 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
6 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
7 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1
8 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
9 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
10 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
11 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
13 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
14 Sobic.010G175000 expressed protein -
15 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
16 Sobic.001G104500 growth-regulating factor, putative, expressed -
17 Sobic.002G168000 expressed protein -
18 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
19 Sobic.001G460100 heparanase-like protein precursor, putative, expressed K07964: heparanase
20 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit


Gene co-expression network
sample Sobic004G330600 Sobic004G330600 Sobic007G043400 Sobic007G043400 Sobic004G330600--Sobic007G043400 Sobic008G090000 Sobic008G090000 Sobic004G330600--Sobic008G090000 Sobic006G275500 Sobic006G275500 Sobic004G330600--Sobic006G275500 Sobic006G094100 Sobic006G094100 Sobic004G330600--Sobic006G094100 Sobic009G188900 Sobic009G188900 Sobic004G330600--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic004G330600--Sobic001G290500 Sobic009G045300 Sobic009G045300 Sobic004G330600--Sobic009G045300 Sobic002G133000 Sobic002G133000 Sobic004G330600--Sobic002G133000 Sobic006G281900 Sobic006G281900 Sobic004G330600--Sobic006G281900 Sobic007G043400--Sobic002G133000 Sobic007G043400--Sobic004G330600 Sobic001G296800 Sobic001G296800 Sobic007G043400--Sobic001G296800 Sobic009G169200 Sobic009G169200 Sobic007G043400--Sobic009G169200 Sobic001G168100 Sobic001G168100 Sobic007G043400--Sobic001G168100 Sobic003G223500 Sobic003G223500 Sobic007G043400--Sobic003G223500 Sobic002G238500 Sobic002G238500 Sobic007G043400--Sobic002G238500 Sobic006G029400 Sobic006G029400 Sobic007G043400--Sobic006G029400 Sobic008G083400 Sobic008G083400 Sobic007G043400--Sobic008G083400 Sobic008G090000--Sobic006G275500 Sobic003G147500 Sobic003G147500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic006G016700 Sobic006G016700 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic009G146250 Sobic009G146250 Sobic008G090000--Sobic009G146250 Sobic002G168000 Sobic002G168000 Sobic008G090000--Sobic002G168000 Sobic008G090000--Sobic009G188900 Sobic002G362200 Sobic002G362200 Sobic008G090000--Sobic002G362200 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic006G275500--Sobic003G147500 Sobic007G187700 Sobic007G187700 Sobic006G275500--Sobic007G187700 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G275500--Sobic006G094100 Sobic006G275500--Sobic009G146250 Sobic006G094100--Sobic001G290500 Sobic006G094100--Sobic006G275500 Sobic001G140700 Sobic001G140700 Sobic006G094100--Sobic001G140700 Sobic009G109300 Sobic009G109300 Sobic006G094100--Sobic009G109300 Sobic006G094100--Sobic004G330600 Sobic006G094100--Sobic009G188900 Sobic002G230800 Sobic002G230800 Sobic006G094100--Sobic002G230800 Sobic010G250400 Sobic010G250400 Sobic006G094100--Sobic010G250400 Sobic006G196600 Sobic006G196600 Sobic006G094100--Sobic006G196600 Sobic009G188900--Sobic002G168000 Sobic009G188900--Sobic010G250400 Sobic009G188900--Sobic006G281900 Sobic001G199500 Sobic001G199500 Sobic009G188900--Sobic001G199500 Sobic009G188900--Sobic006G275500 Sobic001G425700 Sobic001G425700 Sobic009G188900--Sobic001G425700 Sobic009G188900--Sobic001G290500 Sobic005G153000 Sobic005G153000 Sobic009G188900--Sobic005G153000 Sobic009G188900--Sobic007G187700 Sobic001G290500--Sobic009G077300 Sobic001G290500--Sobic006G094100 Sobic001G290500--Sobic006G281900 Sobic003G283600 Sobic003G283600 Sobic001G290500--Sobic003G283600 Sobic001G290500--Sobic006G275500 Sobic001G054700 Sobic001G054700 Sobic001G290500--Sobic001G054700 Sobic001G296100 Sobic001G296100 Sobic001G290500--Sobic001G296100 Sobic001G290500--Sobic009G188900 Sobic009G000600 Sobic009G000600 Sobic001G290500--Sobic009G000600 Sobic009G045300--Sobic004G330600 Sobic008G052300 Sobic008G052300 Sobic009G045300--Sobic008G052300 Sobic010G175000 Sobic010G175000 Sobic009G045300--Sobic010G175000 Sobic009G012600 Sobic009G012600 Sobic009G045300--Sobic009G012600 Sobic009G045300--Sobic009G188900 Sobic009G045300--Sobic006G016700 Sobic009G045300--Sobic006G275500 Sobic003G104100 Sobic003G104100 Sobic009G045300--Sobic003G104100 Sobic005G163400 Sobic005G163400 Sobic009G045300--Sobic005G163400 Sobic002G303800 Sobic002G303800 Sobic002G133000--Sobic002G303800 Sobic002G133000--Sobic007G043400 Sobic005G088900 Sobic005G088900 Sobic002G133000--Sobic005G088900 Sobic002G133000--Sobic004G330600 Sobic004G208100 Sobic004G208100 Sobic002G133000--Sobic004G208100 Sobic006G120600 Sobic006G120600 Sobic002G133000--Sobic006G120600 Sobic001G371100 Sobic001G371100 Sobic002G133000--Sobic001G371100 Sobic010G021900 Sobic010G021900 Sobic002G133000--Sobic010G021900 Sobic004G047500 Sobic004G047500 Sobic002G133000--Sobic004G047500 Sobic006G281900--Sobic002G168000 Sobic002G021200 Sobic002G021200 Sobic006G281900--Sobic002G021200 Sobic006G281900--Sobic009G188900 Sobic006G281900--Sobic001G290500 Sobic006G281900--Sobic001G199500 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic006G281900--Sobic007G187700 Sobic003G024000 Sobic003G024000 Sobic006G281900--Sobic003G024000
Octagon: transcription factors


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