Gene annotation
Transcriptome id Sobic.006G242500.1,Sobic.006G242500.2
Synonym ATCDT1A, CDT1, CDT1A, Sb06g030850
Functional annotation CDT1B - Putative DNA replication initiation protein, expressed
UniProt C5Y946
Pfam PF08839
Panther DB PTHR28637 PTHR28637:SF2
NCBI CDD KOG4762; DNA replication factor
KEGG Orthology K10727; chromatin licensing and DNA replication factor 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54710 : homolog of yeast CDT1 B homolog of yeast CDT1 B
RAP-DB (Rice) LOC_Os10g34820.1 : CDT1B - Putative DNA replication initiation protein, expressed
MaizeGDB (Corn) Zm00025a009515 , Zm00025a057223 , Zm00025a006512
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G242500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
2 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
3 Sobic.004G198900 expressed protein -
4 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
5 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1
6 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
7 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
8 Sobic.006G188800 H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
9 Sobic.001G397800 TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
10 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
11 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
12 Sobic.005G163400 dnaJ domain containing protein, expressed -
13 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
14 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.001G006800 - -
16 Sobic.007G006800 pentatricopeptide, putative, expressed -
17 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
18 Sobic.009G176700 expressed protein -
19 Sobic.006G112700 ATPOT1, putative, expressed -
20 Sobic.008G045000 expressed protein -


Gene co-expression network
sample Sobic006G242500 Sobic006G242500 Sobic001G143600 Sobic001G143600 Sobic006G242500--Sobic001G143600 Sobic001G210000 Sobic001G210000 Sobic006G242500--Sobic001G210000 Sobic004G198900 Sobic004G198900 Sobic006G242500--Sobic004G198900 Sobic003G274400 Sobic003G274400 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic002G318600 Sobic002G318600 Sobic006G242500--Sobic002G318600 Sobic004G307900 Sobic004G307900 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic001G397800 Sobic001G397800 Sobic006G242500--Sobic001G397800 Sobic001G385400 Sobic001G385400 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic002G219900 Sobic002G219900 Sobic001G143600--Sobic002G219900 Sobic003G250900 Sobic003G250900 Sobic001G143600--Sobic003G250900 Sobic003G435500 Sobic003G435500 Sobic001G143600--Sobic003G435500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G507200 Sobic001G507200 Sobic001G143600--Sobic001G507200 Sobic001G006800 Sobic001G006800 Sobic001G210000--Sobic001G006800 Sobic003G212600 Sobic003G212600 Sobic001G210000--Sobic003G212600 Sobic007G031300 Sobic007G031300 Sobic001G210000--Sobic007G031300 Sobic009G087300 Sobic009G087300 Sobic001G210000--Sobic009G087300 Sobic007G209600 Sobic007G209600 Sobic001G210000--Sobic007G209600 Sobic001G210000--Sobic009G049200 Sobic001G210000--Sobic006G242500 Sobic004G287100 Sobic004G287100 Sobic001G210000--Sobic004G287100 Sobic005G163400 Sobic005G163400 Sobic001G210000--Sobic005G163400 Sobic002G017900 Sobic002G017900 Sobic004G198900--Sobic002G017900 Sobic004G198900--Sobic006G242500 Sobic004G212700 Sobic004G212700 Sobic004G198900--Sobic004G212700 Sobic005G120700 Sobic005G120700 Sobic004G198900--Sobic005G120700 Sobic006G233000 Sobic006G233000 Sobic004G198900--Sobic006G233000 Sobic010G032400 Sobic010G032400 Sobic004G198900--Sobic010G032400 Sobic004G198900--Sobic003G274400 Sobic001G536000 Sobic001G536000 Sobic004G198900--Sobic001G536000 Sobic004G155600 Sobic004G155600 Sobic004G198900--Sobic004G155600 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic004G330600 Sobic004G330600 Sobic009G045300--Sobic004G330600 Sobic008G052300 Sobic008G052300 Sobic009G045300--Sobic008G052300 Sobic010G175000 Sobic010G175000 Sobic009G045300--Sobic010G175000 Sobic009G012600 Sobic009G012600 Sobic009G045300--Sobic009G012600 Sobic009G188900 Sobic009G188900 Sobic009G045300--Sobic009G188900 Sobic006G016700 Sobic006G016700 Sobic009G045300--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic009G045300--Sobic006G275500 Sobic003G104100 Sobic003G104100 Sobic009G045300--Sobic003G104100 Sobic009G045300--Sobic005G163400 Sobic002G318600--Sobic006G242500 Sobic002G318600--Sobic002G430900 Sobic002G394800 Sobic002G394800 Sobic002G318600--Sobic002G394800 Sobic002G318600--Sobic004G287100 Sobic008G125000 Sobic008G125000 Sobic002G318600--Sobic008G125000 Sobic002G318600--Sobic005G120700 Sobic008G013300 Sobic008G013300 Sobic002G318600--Sobic008G013300 Sobic002G318600--Sobic002G219900 Sobic002G318600--Sobic002G017900 Sobic003G393100 Sobic003G393100 Sobic004G307900--Sobic003G393100 Sobic001G377700 Sobic001G377700 Sobic004G307900--Sobic001G377700 Sobic003G369200 Sobic003G369200 Sobic004G307900--Sobic003G369200 Sobic009G184200 Sobic009G184200 Sobic004G307900--Sobic009G184200 Sobic003G423600 Sobic003G423600 Sobic004G307900--Sobic003G423600 Sobic006G281400 Sobic006G281400 Sobic004G307900--Sobic006G281400 Sobic002G290000 Sobic002G290000 Sobic004G307900--Sobic002G290000 Sobic004G156200 Sobic004G156200 Sobic004G307900--Sobic004G156200 Sobic002G204400 Sobic002G204400 Sobic004G307900--Sobic002G204400 Sobic003G307200 Sobic003G307200 Sobic006G188800--Sobic003G307200 Sobic006G188800--Sobic001G143600 Sobic003G311500 Sobic003G311500 Sobic006G188800--Sobic003G311500 Sobic002G360500 Sobic002G360500 Sobic006G188800--Sobic002G360500 Sobic004G004600 Sobic004G004600 Sobic006G188800--Sobic004G004600 Sobic006G188800--Sobic006G242500 Sobic002G074000 Sobic002G074000 Sobic006G188800--Sobic002G074000 Sobic001G231200 Sobic001G231200 Sobic006G188800--Sobic001G231200 Sobic002G338700 Sobic002G338700 Sobic006G188800--Sobic002G338700 Sobic001G397800--Sobic006G242500 Sobic008G063600 Sobic008G063600 Sobic001G397800--Sobic008G063600 Sobic001G300000 Sobic001G300000 Sobic001G397800--Sobic001G300000 Sobic001G397800--Sobic002G204400 Sobic008G045000 Sobic008G045000 Sobic001G397800--Sobic008G045000 Sobic002G039800 Sobic002G039800 Sobic001G397800--Sobic002G039800 Sobic001G397800--Sobic003G423600 Sobic001G397800--Sobic004G307900 Sobic001G541000 Sobic001G541000 Sobic001G397800--Sobic001G541000
Octagon: transcription factors


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