Gene annotation
Transcriptome id Sobic.001G397800.2,Sobic.001G397800.1,Sobic.001G397800.3
Synonym Sb01g037640
Functional annotation TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
UniProt A0A1Z5S9W0 , A0A1B6QNN6 , A0A1Z5S9W7
Pfam PF00628 PF00533 PF12738
Panther DB PTHR13561 PTHR13561:SF5
NCBI CDD -
KEGG Orthology K10728; topoisomerase (DNA) II binding protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G02110 : transcription coactivators
RAP-DB (Rice) LOC_Os03g19190.1 : TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
MaizeGDB (Corn) Zm00025a002109
Brachypodium KQK14522 , PNT74535
Barley HORVU2Hr1G092260.29 , HORVU2Hr1G092260.46 , HORVU2Hr1G092260.47 , HORVU2Hr1G092260.40 , HORVU2Hr1G092260.42 , HORVU2Hr1G092260.48 , HORVU2Hr1G092260.49 , HORVU2Hr1G092260.39 , HORVU2Hr1G092260.38 , HORVU2Hr1G092260.34 , HORVU2Hr1G092260.37 , HORVU2Hr1G092260.36 , HORVU2Hr1G092260.33 , HORVU2Hr1G092260.9 , HORVU2Hr1G092260.8 , HORVU2Hr1G092260.3 , HORVU2Hr1G092260.2 , HORVU2Hr1G092260.1 , HORVU2Hr1G092260.5 , HORVU2Hr1G092260.4 , HORVU6Hr1G017340.3 , HORVU6Hr1G017340.2 , HORVU6Hr1G017340.1 , HORVU6Hr1G017340.7 , HORVU6Hr1G017340.6 , HORVU6Hr1G017340.5 , HORVU6Hr1G017340.4 , HORVU6Hr1G017340.8 , HORVU2Hr1G092260.20 , HORVU2Hr1G092260.21 , HORVU2Hr1G092260.19 , HORVU2Hr1G092260.18 , HORVU2Hr1G092260.17 , HORVU2Hr1G092260.15 , HORVU2Hr1G092260.14 , HORVU2Hr1G092260.50
Wheat TraesCS2A02G387500 , TraesCS2B02G405300 , TraesCS6A02G096100 , TraesCS6B02G124500 , TraesCS6D02G087200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
2 Sobic.008G063600 glycosyl hydrolase family protein 27, putative, expressed -
3 Sobic.001G300000 - -
4 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
5 Sobic.008G045000 expressed protein -
6 Sobic.002G039800 EDM2, putative, expressed -
7 Sobic.003G423600 expressed protein K06228: fused
8 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
9 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
10 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
11 Sobic.003G072500 transcription factor X1, putative, expressed -
12 Sobic.007G184100 expressed protein -
13 Sobic.001G203500 pentatricopeptide, putative, expressed -
14 Sobic.007G209600 ENT domain containing protein, expressed -
15 Sobic.007G006800 pentatricopeptide, putative, expressed -
16 Sobic.001G446400 receptor protein kinase CLAVATA1 precursor, putative, expressed -
17 Sobic.007G076200 VERNALIZATION-INSENSITIVE, putative, expressed -
18 Sobic.003G104100 expressed protein -
19 Sobic.007G121600 - -
20 Sobic.005G163400 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic001G397800 Sobic001G397800 Sobic006G242500 Sobic006G242500 Sobic001G397800--Sobic006G242500 Sobic008G063600 Sobic008G063600 Sobic001G397800--Sobic008G063600 Sobic001G300000 Sobic001G300000 Sobic001G397800--Sobic001G300000 Sobic002G204400 Sobic002G204400 Sobic001G397800--Sobic002G204400 Sobic008G045000 Sobic008G045000 Sobic001G397800--Sobic008G045000 Sobic002G039800 Sobic002G039800 Sobic001G397800--Sobic002G039800 Sobic003G423600 Sobic003G423600 Sobic001G397800--Sobic003G423600 Sobic004G307900 Sobic004G307900 Sobic001G397800--Sobic004G307900 Sobic001G541000 Sobic001G541000 Sobic001G397800--Sobic001G541000 Sobic001G143600 Sobic001G143600 Sobic006G242500--Sobic001G143600 Sobic001G210000 Sobic001G210000 Sobic006G242500--Sobic001G210000 Sobic004G198900 Sobic004G198900 Sobic006G242500--Sobic004G198900 Sobic003G274400 Sobic003G274400 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic002G318600 Sobic002G318600 Sobic006G242500--Sobic002G318600 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic006G242500--Sobic001G397800 Sobic001G027500 Sobic001G027500 Sobic008G063600--Sobic001G027500 Sobic002G168000 Sobic002G168000 Sobic008G063600--Sobic002G168000 Sobic009G012600 Sobic009G012600 Sobic008G063600--Sobic009G012600 Sobic003G396700 Sobic003G396700 Sobic008G063600--Sobic003G396700 Sobic008G063600--Sobic009G045300 Sobic003G188600 Sobic003G188600 Sobic008G063600--Sobic003G188600 Sobic003G129500 Sobic003G129500 Sobic008G063600--Sobic003G129500 Sobic008G063600--Sobic008G045000 Sobic009G188900 Sobic009G188900 Sobic008G063600--Sobic009G188900 Sobic003G177000 Sobic003G177000 Sobic001G300000--Sobic003G177000 Sobic001G300000--Sobic001G541000 Sobic007G209600 Sobic007G209600 Sobic001G300000--Sobic007G209600 Sobic007G159200 Sobic007G159200 Sobic001G300000--Sobic007G159200 Sobic007G184100 Sobic007G184100 Sobic001G300000--Sobic007G184100 Sobic008G080500 Sobic008G080500 Sobic001G300000--Sobic008G080500 Sobic006G280100 Sobic006G280100 Sobic001G300000--Sobic006G280100 Sobic003G135500 Sobic003G135500 Sobic001G300000--Sobic003G135500 Sobic001G211500 Sobic001G211500 Sobic001G300000--Sobic001G211500 Sobic009G184200 Sobic009G184200 Sobic002G204400--Sobic009G184200 Sobic008G148000 Sobic008G148000 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic010G105400 Sobic010G105400 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic001G398400 Sobic001G398400 Sobic002G204400--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic002G204400--Sobic004G271300 Sobic007G161600 Sobic007G161600 Sobic008G045000--Sobic007G161600 Sobic009G216500 Sobic009G216500 Sobic008G045000--Sobic009G216500 Sobic009G259900 Sobic009G259900 Sobic008G045000--Sobic009G259900 Sobic006G179300 Sobic006G179300 Sobic008G045000--Sobic006G179300 Sobic008G045000--Sobic003G177000 Sobic009G177200 Sobic009G177200 Sobic008G045000--Sobic009G177200 Sobic003G072500 Sobic003G072500 Sobic008G045000--Sobic003G072500 Sobic008G045000--Sobic001G300000 Sobic006G112700 Sobic006G112700 Sobic008G045000--Sobic006G112700 Sobic010G262100 Sobic010G262100 Sobic002G039800--Sobic010G262100 Sobic002G039800--Sobic008G063600 Sobic002G052700 Sobic002G052700 Sobic002G039800--Sobic002G052700 Sobic003G435500 Sobic003G435500 Sobic002G039800--Sobic003G435500 Sobic003G123100 Sobic003G123100 Sobic002G039800--Sobic003G123100 Sobic010G188000 Sobic010G188000 Sobic002G039800--Sobic010G188000 Sobic004G038100 Sobic004G038100 Sobic002G039800--Sobic004G038100 Sobic010G138900 Sobic010G138900 Sobic002G039800--Sobic010G138900 Sobic002G039800--Sobic001G397800 Sobic003G423600--Sobic006G281400 Sobic003G423600--Sobic008G148000 Sobic003G423600--Sobic005G000500 Sobic004G156200 Sobic004G156200 Sobic003G423600--Sobic004G156200 Sobic003G423600--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic003G423600--Sobic002G296000 Sobic003G369200 Sobic003G369200 Sobic003G423600--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic003G423600--Sobic007G168900 Sobic005G110535 Sobic005G110535 Sobic003G423600--Sobic005G110535 Sobic004G307900--Sobic003G393100 Sobic001G377700 Sobic001G377700 Sobic004G307900--Sobic001G377700 Sobic004G307900--Sobic003G369200 Sobic004G307900--Sobic009G184200 Sobic004G307900--Sobic003G423600 Sobic004G307900--Sobic006G281400 Sobic002G290000 Sobic002G290000 Sobic004G307900--Sobic002G290000 Sobic004G307900--Sobic004G156200 Sobic004G307900--Sobic002G204400 Sobic001G036300 Sobic001G036300 Sobic001G541000--Sobic001G036300 Sobic001G541000--Sobic003G177000 Sobic001G541000--Sobic001G300000 Sobic009G101000 Sobic009G101000 Sobic001G541000--Sobic009G101000 Sobic001G541000--Sobic007G184100 Sobic001G541000--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic001G541000--Sobic003G431600 Sobic001G541000--Sobic003G135500 Sobic010G153300 Sobic010G153300 Sobic001G541000--Sobic010G153300
Octagon: transcription factors


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