Gene annotation
Transcriptome id Sobic.007G076200.4,Sobic.007G076200.1,Sobic.007G076200.2,Sobic.007G076200.3,Sobic.007G076200.6,Sobic.007G076200.5
Synonym VEL1, Sb07g006110
Functional annotation VERNALIZATION-INSENSITIVE, putative, expressed
UniProt A0A1Z5R9G2 , C5YIK3
Pfam PF07227
Panther DB PTHR21736 PTHR21736:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30200 : vernalization5/VIN3-like
RAP-DB (Rice) LOC_Os08g12430.1 : VERNALIZATION-INSENSITIVE, putative, expressed
MaizeGDB (Corn) Zm00025a029910 , Zm00025a054874
Brachypodium KQJ95586
Barley HORVU6Hr1G022770.6 , HORVU6Hr1G022770.4 , HORVU6Hr1G022770.5 , HORVU6Hr1G022770.2 , HORVU6Hr1G022770.3 , HORVU6Hr1G022770.1
Wheat -
Populus -


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cDNA sequences
Sobic.007G076200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
2 Sobic.006G193100 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
3 Sobic.009G202801 - K10406: kinesin family member C2/C3
4 Sobic.010G222800 expressed protein -
5 Sobic.007G087800 expressed protein K06085: SSX2IP, synovial sarcoma, X breakpoint 2 interacting protein
6 Sobic.008G070700 leafbladeless1, putative, expressed -
7 Sobic.002G074000 expressed protein -
8 Sobic.003G031700 protein kinase family protein, putative, expressed -
9 Sobic.001G008300 expressed protein -
10 Sobic.010G103500 ATMAP70 protein, putative, expressed -
11 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
12 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
13 Sobic.004G328300 expressed protein -
14 Sobic.004G306100 expressed protein -
15 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
16 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
17 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
18 Sobic.009G120400 methyltransferase, putative, expressed -
19 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
20 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1


Gene co-expression network
sample Sobic007G076200 Sobic007G076200 Sobic010G024000 Sobic010G024000 Sobic007G076200--Sobic010G024000 Sobic006G193100 Sobic006G193100 Sobic007G076200--Sobic006G193100 Sobic009G202801 Sobic009G202801 Sobic007G076200--Sobic009G202801 Sobic010G222800 Sobic010G222800 Sobic007G076200--Sobic010G222800 Sobic007G087800 Sobic007G087800 Sobic007G076200--Sobic007G087800 Sobic008G070700 Sobic008G070700 Sobic007G076200--Sobic008G070700 Sobic002G074000 Sobic002G074000 Sobic007G076200--Sobic002G074000 Sobic003G031700 Sobic003G031700 Sobic007G076200--Sobic003G031700 Sobic001G008300 Sobic001G008300 Sobic007G076200--Sobic001G008300 Sobic010G024000--Sobic010G222800 Sobic008G131900 Sobic008G131900 Sobic010G024000--Sobic008G131900 Sobic010G024000--Sobic007G076200 Sobic003G411700 Sobic003G411700 Sobic010G024000--Sobic003G411700 Sobic002G271400 Sobic002G271400 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic010G024000--Sobic006G193100 Sobic003G343200 Sobic003G343200 Sobic010G024000--Sobic003G343200 Sobic002G052800 Sobic002G052800 Sobic010G024000--Sobic002G052800 Sobic006G193100--Sobic003G031700 Sobic006G193100--Sobic001G008300 Sobic006G193100--Sobic009G202801 Sobic003G315700 Sobic003G315700 Sobic006G193100--Sobic003G315700 Sobic004G328300 Sobic004G328300 Sobic006G193100--Sobic004G328300 Sobic008G148000 Sobic008G148000 Sobic006G193100--Sobic008G148000 Sobic002G319300 Sobic002G319300 Sobic006G193100--Sobic002G319300 Sobic009G136000 Sobic009G136000 Sobic006G193100--Sobic009G136000 Sobic002G204400 Sobic002G204400 Sobic006G193100--Sobic002G204400 Sobic003G292700 Sobic003G292700 Sobic009G202801--Sobic003G292700 Sobic009G202801--Sobic006G193100 Sobic009G202801--Sobic003G031700 Sobic009G202801--Sobic003G315700 Sobic006G142500 Sobic006G142500 Sobic009G202801--Sobic006G142500 Sobic009G202801--Sobic001G008300 Sobic009G202801--Sobic002G074000 Sobic002G317700 Sobic002G317700 Sobic009G202801--Sobic002G317700 Sobic004G246500 Sobic004G246500 Sobic009G202801--Sobic004G246500 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic002G112000 Sobic002G112000 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900 Sobic007G116800 Sobic007G116800 Sobic007G087800--Sobic007G116800 Sobic010G092400 Sobic010G092400 Sobic007G087800--Sobic010G092400 Sobic007G087800--Sobic004G246500 Sobic007G087800--Sobic002G074000 Sobic007G087800--Sobic003G031700 Sobic001G493900 Sobic001G493900 Sobic007G087800--Sobic001G493900 Sobic010G129700 Sobic010G129700 Sobic007G087800--Sobic010G129700 Sobic004G267600 Sobic004G267600 Sobic007G087800--Sobic004G267600 Sobic006G014400 Sobic006G014400 Sobic007G087800--Sobic006G014400 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic008G070700--Sobic002G112000 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic008G070700--Sobic010G222800 Sobic008G070700--Sobic010G092400 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic003G307200 Sobic003G307200 Sobic002G074000--Sobic003G307200 Sobic002G417000 Sobic002G417000 Sobic002G074000--Sobic002G417000 Sobic002G074000--Sobic007G087800 Sobic002G074000--Sobic004G267600 Sobic002G074000--Sobic001G493900 Sobic002G074000--Sobic001G008300 Sobic002G074000--Sobic009G202801 Sobic002G074000--Sobic010G129700 Sobic005G055600 Sobic005G055600 Sobic002G074000--Sobic005G055600 Sobic002G362700 Sobic002G362700 Sobic003G031700--Sobic002G362700 Sobic002G320600 Sobic002G320600 Sobic003G031700--Sobic002G320600 Sobic003G031700--Sobic006G193100 Sobic001G074100 Sobic001G074100 Sobic003G031700--Sobic001G074100 Sobic003G031700--Sobic009G202801 Sobic001G522300 Sobic001G522300 Sobic003G031700--Sobic001G522300 Sobic003G031700--Sobic001G008300 Sobic010G211800 Sobic010G211800 Sobic003G031700--Sobic010G211800 Sobic003G031700--Sobic007G087800 Sobic001G008300--Sobic002G319300 Sobic001G008300--Sobic006G193100 Sobic007G160300 Sobic007G160300 Sobic001G008300--Sobic007G160300 Sobic010G192500 Sobic010G192500 Sobic001G008300--Sobic010G192500 Sobic001G155700 Sobic001G155700 Sobic001G008300--Sobic001G155700 Sobic001G390400 Sobic001G390400 Sobic001G008300--Sobic001G390400 Sobic001G008300--Sobic003G031700 Sobic001G008300--Sobic001G493900 Sobic001G008300--Sobic009G202801
Octagon: transcription factors


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