Gene annotation
Transcriptome id Sobic.001G211500.1
Synonym ATLIG1, Sb01g018700, LIG1
Functional annotation LIG1 - Putative DNA ligase I, expressed
UniProt A0A1B6QK46
Pfam PF04679 PF04675 PF01068
Panther DB PTHR10459 PTHR10459:SF10
NCBI CDD -
KEGG Orthology K10747; DNA ligase 1
Gene Ontology GO:0006310; DNA recombination GO:0006281DNA repair GO:0003910DNA ligase (ATP) activity GO:0003677DNA binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G08130 : DNA ligase 1
RAP-DB (Rice) LOC_Os10g34750.2 : LIG1 - Putative DNA ligase I, expressed
MaizeGDB (Corn) Zm00025a028337 , Zm00025a006518
Brachypodium KQJ97226 , KQJ97225 , PNT67614 , PNT67613
Barley HORVU1Hr1G044350.18 , HORVU1Hr1G044350.13 , HORVU1Hr1G044350.12 , HORVU1Hr1G044350.11 , HORVU1Hr1G044350.10 , HORVU1Hr1G044350.17 , HORVU1Hr1G044350.16 , HORVU1Hr1G044350.15 , HORVU1Hr1G044350.14 , HORVU1Hr1G044350.9 , HORVU1Hr1G044350.8 , HORVU1Hr1G044350.3 , HORVU1Hr1G044350.2 , HORVU1Hr1G044350.1 , HORVU1Hr1G044350.7 , HORVU1Hr1G044350.6 , HORVU1Hr1G044350.5 , HORVU1Hr1G044350.4
Wheat TraesCS1A02G172100 , TraesCS1D02G172600 , TraesCS1B02G184700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
2 Sobic.007G209600 ENT domain containing protein, expressed -
3 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
5 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
6 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
7 Sobic.007G076200 VERNALIZATION-INSENSITIVE, putative, expressed -
8 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
9 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
10 Sobic.001G242300 expressed protein -
11 Sobic.010G227000 pentatricopeptide, putative, expressed -
12 Sobic.002G173400 expressed protein -
13 Sobic.009G120400 methyltransferase, putative, expressed -
14 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
15 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
16 Sobic.001G361200 expressed protein -
17 Sobic.001G537400 MYB family transcription factor, putative, expressed -
18 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
19 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
20 Sobic.010G222800 expressed protein -


Gene co-expression network
sample Sobic001G211500 Sobic001G211500 Sobic006G106200 Sobic006G106200 Sobic001G211500--Sobic006G106200 Sobic007G209600 Sobic007G209600 Sobic001G211500--Sobic007G209600 Sobic007G031300 Sobic007G031300 Sobic001G211500--Sobic007G031300 Sobic009G052100 Sobic009G052100 Sobic001G211500--Sobic009G052100 Sobic003G411700 Sobic003G411700 Sobic001G211500--Sobic003G411700 Sobic008G169400 Sobic008G169400 Sobic001G211500--Sobic008G169400 Sobic007G076200 Sobic007G076200 Sobic001G211500--Sobic007G076200 Sobic002G271400 Sobic002G271400 Sobic001G211500--Sobic002G271400 Sobic010G024000 Sobic010G024000 Sobic001G211500--Sobic010G024000 Sobic006G106200--Sobic001G211500 Sobic008G070700 Sobic008G070700 Sobic006G106200--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic006G106200--Sobic010G222800 Sobic003G072500 Sobic003G072500 Sobic006G106200--Sobic003G072500 Sobic003G289700 Sobic003G289700 Sobic006G106200--Sobic003G289700 Sobic004G149400 Sobic004G149400 Sobic006G106200--Sobic004G149400 Sobic001G005800 Sobic001G005800 Sobic006G106200--Sobic001G005800 Sobic009G216500 Sobic009G216500 Sobic006G106200--Sobic009G216500 Sobic002G112000 Sobic002G112000 Sobic006G106200--Sobic002G112000 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic001G210000 Sobic001G210000 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic007G031300--Sobic008G169400 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic001G296800 Sobic001G296800 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic007G031300--Sobic001G210000 Sobic003G153900 Sobic003G153900 Sobic007G031300--Sobic003G153900 Sobic007G031300--Sobic003G212600 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300 Sobic003G411700--Sobic010G222800 Sobic004G306100 Sobic004G306100 Sobic003G411700--Sobic004G306100 Sobic003G411700--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic003G411700--Sobic010G103500 Sobic001G425200 Sobic001G425200 Sobic003G411700--Sobic001G425200 Sobic003G343200 Sobic003G343200 Sobic003G411700--Sobic003G343200 Sobic001G212600 Sobic001G212600 Sobic003G411700--Sobic001G212600 Sobic003G411700--Sobic010G024000 Sobic005G160200 Sobic005G160200 Sobic003G411700--Sobic005G160200 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic007G076200--Sobic010G024000 Sobic006G193100 Sobic006G193100 Sobic007G076200--Sobic006G193100 Sobic009G202801 Sobic009G202801 Sobic007G076200--Sobic009G202801 Sobic007G076200--Sobic010G222800 Sobic007G087800 Sobic007G087800 Sobic007G076200--Sobic007G087800 Sobic007G076200--Sobic008G070700 Sobic002G074000 Sobic002G074000 Sobic007G076200--Sobic002G074000 Sobic003G031700 Sobic003G031700 Sobic007G076200--Sobic003G031700 Sobic001G008300 Sobic001G008300 Sobic007G076200--Sobic001G008300 Sobic002G271400--Sobic004G306100 Sobic002G271400--Sobic003G343200 Sobic006G127200 Sobic006G127200 Sobic002G271400--Sobic006G127200 Sobic002G271400--Sobic003G411700 Sobic001G025900 Sobic001G025900 Sobic002G271400--Sobic001G025900 Sobic002G271400--Sobic010G222800 Sobic003G013800 Sobic003G013800 Sobic002G271400--Sobic003G013800 Sobic008G004900 Sobic008G004900 Sobic002G271400--Sobic008G004900 Sobic002G271400--Sobic010G024000 Sobic010G024000--Sobic010G222800 Sobic008G131900 Sobic008G131900 Sobic010G024000--Sobic008G131900 Sobic010G024000--Sobic007G076200 Sobic010G024000--Sobic003G411700 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic010G024000--Sobic006G193100 Sobic010G024000--Sobic003G343200 Sobic002G052800 Sobic002G052800 Sobic010G024000--Sobic002G052800
Octagon: transcription factors


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