Gene annotation
Transcriptome id Sobic.010G227000.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A194YKW3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF830
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g05140.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a051815
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
2 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
3 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
4 Sobic.009G120400 methyltransferase, putative, expressed -
5 Sobic.008G080500 expressed protein -
6 Sobic.003G299500 expressed protein -
7 Sobic.006G280100 SET domain containing protein, expressed -
8 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
9 Sobic.003G360300 exostosin family domain containing protein, expressed -
10 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
11 Sobic.001G242300 expressed protein -
12 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
13 Sobic.001G395200 cyclin-related protein, putative, expressed -
14 Sobic.010G051400 zinc finger protein, putative, expressed K04706: E3 SUMO-protein ligase PIAS1
15 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
16 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
17 Sobic.004G342300 expressed protein -
18 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
19 Sobic.006G179300 OsFBX64 - F-box domain containing protein, expressed -
20 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4


Gene co-expression network
sample Sobic010G227000 Sobic010G227000 Sobic010G269300 Sobic010G269300 Sobic010G227000--Sobic010G269300 Sobic007G034200 Sobic007G034200 Sobic010G227000--Sobic007G034200 Sobic001G123600 Sobic001G123600 Sobic010G227000--Sobic001G123600 Sobic009G120400 Sobic009G120400 Sobic010G227000--Sobic009G120400 Sobic008G080500 Sobic008G080500 Sobic010G227000--Sobic008G080500 Sobic003G299500 Sobic003G299500 Sobic010G227000--Sobic003G299500 Sobic006G280100 Sobic006G280100 Sobic010G227000--Sobic006G280100 Sobic001G211500 Sobic001G211500 Sobic010G227000--Sobic001G211500 Sobic003G360300 Sobic003G360300 Sobic010G227000--Sobic003G360300 Sobic007G125700 Sobic007G125700 Sobic010G269300--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G269300--Sobic002G430900 Sobic002G263700 Sobic002G263700 Sobic010G269300--Sobic002G263700 Sobic010G269300--Sobic001G123600 Sobic010G269300--Sobic003G360300 Sobic010G269300--Sobic008G080500 Sobic010G236200 Sobic010G236200 Sobic010G269300--Sobic010G236200 Sobic010G279900 Sobic010G279900 Sobic010G269300--Sobic010G279900 Sobic009G032200 Sobic009G032200 Sobic010G269300--Sobic009G032200 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic001G051400 Sobic001G051400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic009G120400--Sobic001G051400 Sobic007G159200 Sobic007G159200 Sobic008G080500--Sobic007G159200 Sobic010G262100 Sobic010G262100 Sobic008G080500--Sobic010G262100 Sobic004G355800 Sobic004G355800 Sobic008G080500--Sobic004G355800 Sobic006G112700 Sobic006G112700 Sobic008G080500--Sobic006G112700 Sobic002G079100 Sobic002G079100 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic008G080500--Sobic010G269300 Sobic008G080500--Sobic003G299500 Sobic002G235900 Sobic002G235900 Sobic008G080500--Sobic002G235900 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic003G299500--Sobic001G123600 Sobic006G245900 Sobic006G245900 Sobic003G299500--Sobic006G245900 Sobic003G299500--Sobic002G235900 Sobic003G299500--Sobic006G191200 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic006G280100--Sobic002G079100 Sobic006G280100--Sobic008G080500 Sobic006G106200 Sobic006G106200 Sobic001G211500--Sobic006G106200 Sobic007G209600 Sobic007G209600 Sobic001G211500--Sobic007G209600 Sobic007G031300 Sobic007G031300 Sobic001G211500--Sobic007G031300 Sobic009G052100 Sobic009G052100 Sobic001G211500--Sobic009G052100 Sobic003G411700 Sobic003G411700 Sobic001G211500--Sobic003G411700 Sobic008G169400 Sobic008G169400 Sobic001G211500--Sobic008G169400 Sobic007G076200 Sobic007G076200 Sobic001G211500--Sobic007G076200 Sobic002G271400 Sobic002G271400 Sobic001G211500--Sobic002G271400 Sobic010G024000 Sobic010G024000 Sobic001G211500--Sobic010G024000 Sobic003G259600 Sobic003G259600 Sobic003G360300--Sobic003G259600 Sobic003G360300--Sobic001G123600 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic002G142700 Sobic002G142700 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic004G277400 Sobic004G277400 Sobic003G360300--Sobic004G277400 Sobic003G360300--Sobic008G080500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.