Gene annotation
Transcriptome id Sobic.001G395200.1
Synonym Sb01g037420
Functional annotation cyclin-related protein, putative, expressed
UniProt C5WMG4
Pfam -
Panther DB PTHR12444 PTHR12444:SF3
NCBI CDD KOG1877; Putative transmembrane protein cmp44E
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G26850 : Uncharacterized protein
RAP-DB (Rice) LOC_Os03g19520.1 : cyclin-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a002146
Brachypodium KQK21990 , KQK21991
Barley HORVU4Hr1G053650.7 , HORVU4Hr1G053650.6 , HORVU4Hr1G053650.5 , HORVU4Hr1G053650.4 , HORVU4Hr1G053650.3 , HORVU4Hr1G053650.2 , HORVU4Hr1G053650.1
Wheat TraesCS4B02G181700 , TraesCS4A02G121600 , TraesCS4B02G181700 , TraesCS4B02G181700 , TraesCS4B02G181700 , TraesCS4A02G121600 , TraesCS4B02G181700 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4A02G121600 , TraesCS4D02G184300 , TraesCS4D02G184300 , TraesCS4D02G184300 , TraesCS4D02G184300 , TraesCS4D02G184300 , TraesCS4D02G184300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G395200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G104100 expressed protein -
2 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
4 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
5 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
6 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
8 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
9 Sobic.001G079900 expressed protein -
10 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
11 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
12 Sobic.002G430900 PWWP domain containing protein, expressed -
13 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
14 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
15 Sobic.005G163400 dnaJ domain containing protein, expressed -
16 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
17 Sobic.001G315400 expressed protein -
18 Sobic.004G144100 - -
19 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
20 Sobic.008G048966 - -


Gene co-expression network
sample Sobic001G395200 Sobic001G395200 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic007G125700 Sobic007G125700 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic003G104100--Sobic009G259900 Sobic009G259900--Sobic001G395200 Sobic009G259900--Sobic004G043750 Sobic009G259900--Sobic003G104100 Sobic003G129500 Sobic003G129500 Sobic009G259900--Sobic003G129500 Sobic008G045000 Sobic008G045000 Sobic009G259900--Sobic008G045000 Sobic005G153000 Sobic005G153000 Sobic009G259900--Sobic005G153000 Sobic009G259900--Sobic006G008300 Sobic009G259900--Sobic010G149600 Sobic009G259900--Sobic005G163400 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic010G149600--Sobic002G219900 Sobic010G149600--Sobic007G125700 Sobic010G149600--Sobic002G430900 Sobic010G149600--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic010G149600--Sobic009G006900 Sobic010G236200 Sobic010G236200 Sobic010G149600--Sobic010G236200 Sobic005G032600 Sobic005G032600 Sobic010G149600--Sobic005G032600 Sobic004G207000 Sobic004G207000 Sobic010G149600--Sobic004G207000 Sobic010G149600--Sobic004G043750 Sobic006G142500 Sobic006G142500 Sobic003G351900--Sobic006G142500 Sobic003G351900--Sobic001G079900 Sobic002G006100 Sobic002G006100 Sobic003G351900--Sobic002G006100 Sobic002G027600 Sobic002G027600 Sobic003G351900--Sobic002G027600 Sobic003G153900 Sobic003G153900 Sobic003G351900--Sobic003G153900 Sobic001G212600 Sobic001G212600 Sobic003G351900--Sobic001G212600 Sobic003G351900--Sobic005G032600 Sobic004G164700 Sobic004G164700 Sobic003G351900--Sobic004G164700 Sobic003G351900--Sobic001G395200 Sobic006G008300--Sobic001G395200 Sobic010G143600 Sobic010G143600 Sobic006G008300--Sobic010G143600 Sobic006G008300--Sobic003G104100 Sobic006G008300--Sobic003G153900 Sobic009G216500 Sobic009G216500 Sobic006G008300--Sobic009G216500 Sobic003G411700 Sobic003G411700 Sobic006G008300--Sobic003G411700 Sobic009G105400 Sobic009G105400 Sobic006G008300--Sobic009G105400 Sobic006G008300--Sobic003G129500 Sobic009G207400 Sobic009G207400 Sobic006G008300--Sobic009G207400 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.