Gene annotation
Transcriptome id Sobic.006G022400.1
Synonym Sb06g002090
Functional annotation F-box/RNI-like/FBD-like domains-containing protein( (PubMedID : 26759170,(PubMedID : 24597475)
OsFBD9 - F-box and FBD domain containing protein, expressed
UniProt C5YCN7 , C6JSE0
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G22730 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os04g13160.1 : OsFBD9 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK21695
Barley HORVU4Hr1G021110.4
Wheat TraesCS4D02G117500 , TraesCS4D02G356500 , TraesCS3D02G422600 , TraesCS4D02G113200 , TraesCS4A02G195800 , TraesCS4B02G115500 , TraesCS4A02G199900 , TraesCS3D02G163600 , TraesCS3A02G155900 , TraesCS4B02G119200 , TraesCS3A02G427000 , TraesCS3B02G463200
Populus -


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cDNA sequences
Sobic.006G022400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G207000 fasciated ear2, putative, expressed -
2 Sobic.001G079900 expressed protein -
3 Sobic.009G216500 expressed protein -
4 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
5 Sobic.001G395200 cyclin-related protein, putative, expressed -
6 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
7 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
8 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
9 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
10 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
11 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
12 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
13 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
14 Sobic.004G149400 ankyrin, putative, expressed -
15 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
16 Sobic.009G141700 expressed protein -
17 Sobic.008G044600 expressed protein -
18 Sobic.010G013500 growth-regulating factor, putative, expressed -
19 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G173700 tetraspanin family protein, putative, expressed -


Gene co-expression network
sample Sobic006G022400 Sobic006G022400 Sobic004G207000 Sobic004G207000 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic005G177900 Sobic005G177900 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022500 Sobic006G022500 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic004G207000--Sobic006G022400 Sobic001G540700 Sobic001G540700 Sobic004G207000--Sobic001G540700 Sobic007G125700 Sobic007G125700 Sobic004G207000--Sobic007G125700 Sobic009G006900 Sobic009G006900 Sobic004G207000--Sobic009G006900 Sobic002G302600 Sobic002G302600 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic004G207000--Sobic005G032600 Sobic010G149600 Sobic010G149600 Sobic004G207000--Sobic010G149600 Sobic009G031500 Sobic009G031500 Sobic004G207000--Sobic009G031500 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700 Sobic009G216500--Sobic006G022400 Sobic004G199200 Sobic004G199200 Sobic009G216500--Sobic004G199200 Sobic009G216500--Sobic004G149400 Sobic006G008300 Sobic006G008300 Sobic009G216500--Sobic006G008300 Sobic008G045000 Sobic008G045000 Sobic009G216500--Sobic008G045000 Sobic006G106200 Sobic006G106200 Sobic009G216500--Sobic006G106200 Sobic009G216500--Sobic004G207000 Sobic004G313500 Sobic004G313500 Sobic009G216500--Sobic004G313500 Sobic009G216500--Sobic005G062600 Sobic001G384600 Sobic001G384600 Sobic005G177900--Sobic001G384600 Sobic005G177900--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic005G177900--Sobic004G052800 Sobic005G177900--Sobic006G022500 Sobic005G177900--Sobic004G207000 Sobic001G228400 Sobic001G228400 Sobic005G177900--Sobic001G228400 Sobic006G126600 Sobic006G126600 Sobic005G177900--Sobic006G126600 Sobic004G189700 Sobic004G189700 Sobic005G177900--Sobic004G189700 Sobic002G223300 Sobic002G223300 Sobic005G177900--Sobic002G223300 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic001G395200--Sobic010G149600 Sobic001G395200--Sobic003G351900 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G395200--Sobic001G079900 Sobic006G142500 Sobic006G142500 Sobic003G351900--Sobic006G142500 Sobic003G351900--Sobic001G079900 Sobic002G006100 Sobic002G006100 Sobic003G351900--Sobic002G006100 Sobic003G351900--Sobic002G027600 Sobic003G153900 Sobic003G153900 Sobic003G351900--Sobic003G153900 Sobic001G212600 Sobic001G212600 Sobic003G351900--Sobic001G212600 Sobic003G351900--Sobic005G032600 Sobic004G164700 Sobic004G164700 Sobic003G351900--Sobic004G164700 Sobic003G351900--Sobic001G395200 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022500--Sobic006G022400 Sobic006G022500--Sobic005G177900 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic005G032600--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic005G032600--Sobic004G267600 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic006G272800 Sobic006G272800 Sobic005G032600--Sobic006G272800 Sobic005G032600--Sobic001G493900 Sobic005G032600--Sobic008G151600 Sobic005G032600--Sobic003G351900 Sobic007G032100 Sobic007G032100 Sobic005G032600--Sobic007G032100
Octagon: transcription factors


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