Gene annotation
Transcriptome id Sobic.010G013500.2
Synonym GRF5, Sb10g001350, AtGRF5
Functional annotation growth-regulating factor, putative, expressed
UniProt C5Z2U9
Pfam PF08879
Panther DB PTHR31602 PTHR31602:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G13960 : growth-regulating factor 5
RAP-DB (Rice) LOC_Os06g02560.3 : growth-regulating factor, putative, expressed
MaizeGDB (Corn) Zm00025a056942 , Zm00025a050243 , Zm00025a009932 , Zm00025a021685 , Zm00025a041311 , Zm00025a032451
Brachypodium KQJ84396 , KQK19811 , KQK00900
Barley HORVU0Hr1G016610.1 , HORVU0Hr1G016610.3 , HORVU6Hr1G068370.10 , HORVU0Hr1G026650.1 , HORVU6Hr1G068370.8 , HORVU6Hr1G068370.9 , HORVU6Hr1G068370.4 , HORVU6Hr1G068370.5 , HORVU6Hr1G068370.6 , HORVU6Hr1G068370.7 , HORVU6Hr1G068370.1 , HORVU6Hr1G068370.2 , HORVU6Hr1G068370.3 , HORVU7Hr1G008680.13 , HORVU7Hr1G008680.12 , HORVU7Hr1G008680.11 , HORVU7Hr1G008680.10 , HORVU7Hr1G008680.16 , HORVU7Hr1G008680.15 , HORVU7Hr1G008680.14 , HORVU2Hr1G101770.18 , HORVU2Hr1G101770.14 , HORVU2Hr1G101770.15 , HORVU2Hr1G101770.16 , HORVU2Hr1G101770.17 , HORVU2Hr1G101770.10 , HORVU2Hr1G101770.11 , HORVU2Hr1G101770.13 , HORVU2Hr1G101770.6 , HORVU2Hr1G101770.7 , HORVU2Hr1G101770.4 , HORVU2Hr1G101770.3 , HORVU2Hr1G101770.8 , HORVU2Hr1G101770.9 , HORVU7Hr1G008680.9 , HORVU7Hr1G008680.8 , HORVU7Hr1G008680.3 , HORVU7Hr1G008680.2 , HORVU7Hr1G008680.1 , HORVU7Hr1G008680.7 , HORVU7Hr1G008680.6 , HORVU7Hr1G008680.5 , HORVU7Hr1G008680.4 , HORVU0Hr1G016590.2 , HORVU0Hr1G016590.1
Wheat TraesCS2A02G435100 , TraesCS2B02G458400 , TraesCS6D02G245300 , TraesCS7A02G049100 , TraesCS7A02G049100 , TraesCS2D02G435200 , TraesCS6B02G296900 , TraesCS7D02G044200 , TraesCS6A02G269600 , TraesCS4A02G434900
Populus PNT07290 , PNS90401 , PNT31060


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cDNA sequences
Sobic.010G013500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000600 expressed protein -
2 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
3 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
4 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
5 Sobic.002G284400 peroxisomal multifunctional enzyme type 2, putative, expressed -
6 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
7 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
8 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
9 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
10 Sobic.010G221200 neurochondrin family protein, putative, expressed -
11 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
12 Sobic.006G203400 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659900)@growth-regulating factor, putative, expressed -
13 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
14 Sobic.004G148900 ankyrin, putative, expressed -
15 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
16 Sobic.001G264201 - -
17 Sobic.009G216500 expressed protein -
18 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
19 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
20 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1


Gene co-expression network
sample Sobic010G013500 Sobic010G013500 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic004G199200 Sobic004G199200 Sobic010G013500--Sobic004G199200 Sobic006G022400 Sobic006G022400 Sobic010G013500--Sobic006G022400 Sobic002G223300 Sobic002G223300 Sobic010G013500--Sobic002G223300 Sobic002G284400 Sobic002G284400 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic001G372900 Sobic001G372900 Sobic010G013500--Sobic001G372900 Sobic006G281900 Sobic006G281900 Sobic010G013500--Sobic006G281900 Sobic005G120600 Sobic005G120600 Sobic010G013500--Sobic005G120600 Sobic004G057700 Sobic004G057700 Sobic009G000600--Sobic004G057700 Sobic009G000600--Sobic001G290500 Sobic001G183500 Sobic001G183500 Sobic009G000600--Sobic001G183500 Sobic009G077300 Sobic009G077300 Sobic009G000600--Sobic009G077300 Sobic009G000600--Sobic010G013500 Sobic005G153000 Sobic005G153000 Sobic009G000600--Sobic005G153000 Sobic006G240900 Sobic006G240900 Sobic009G000600--Sobic006G240900 Sobic001G079900 Sobic001G079900 Sobic009G000600--Sobic001G079900 Sobic008G048966 Sobic008G048966 Sobic009G000600--Sobic008G048966 Sobic009G216500 Sobic009G216500 Sobic004G199200--Sobic009G216500 Sobic009G148200 Sobic009G148200 Sobic004G199200--Sobic009G148200 Sobic009G105400 Sobic009G105400 Sobic004G199200--Sobic009G105400 Sobic004G199200--Sobic006G022400 Sobic001G264201 Sobic001G264201 Sobic004G199200--Sobic001G264201 Sobic003G104100 Sobic003G104100 Sobic004G199200--Sobic003G104100 Sobic001G395200 Sobic001G395200 Sobic004G199200--Sobic001G395200 Sobic010G277200 Sobic010G277200 Sobic004G199200--Sobic010G277200 Sobic004G199200--Sobic010G013500 Sobic004G207000 Sobic004G207000 Sobic006G022400--Sobic004G207000 Sobic006G022400--Sobic001G079900 Sobic006G022400--Sobic009G216500 Sobic005G177900 Sobic005G177900 Sobic006G022400--Sobic005G177900 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022500 Sobic006G022500 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic002G284400--Sobic001G264201 Sobic002G284400--Sobic010G013500 Sobic002G284400--Sobic009G105400 Sobic006G262501 Sobic006G262501 Sobic002G284400--Sobic006G262501 Sobic001G033900 Sobic001G033900 Sobic002G284400--Sobic001G033900 Sobic008G118100 Sobic008G118100 Sobic002G284400--Sobic008G118100 Sobic002G284400--Sobic006G281900 Sobic001G242500 Sobic001G242500 Sobic002G284400--Sobic001G242500 Sobic003G236150 Sobic003G236150 Sobic002G284400--Sobic003G236150 Sobic001G290500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic001G290500--Sobic006G094100 Sobic001G290500--Sobic006G281900 Sobic003G283600 Sobic003G283600 Sobic001G290500--Sobic003G283600 Sobic006G275500 Sobic006G275500 Sobic001G290500--Sobic006G275500 Sobic001G054700 Sobic001G054700 Sobic001G290500--Sobic001G054700 Sobic001G296100 Sobic001G296100 Sobic001G290500--Sobic001G296100 Sobic009G188900 Sobic009G188900 Sobic001G290500--Sobic009G188900 Sobic001G290500--Sobic009G000600 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic001G372900--Sobic002G334600 Sobic002G168000 Sobic002G168000 Sobic006G281900--Sobic002G168000 Sobic002G021200 Sobic002G021200 Sobic006G281900--Sobic002G021200 Sobic006G281900--Sobic009G188900 Sobic006G281900--Sobic001G290500 Sobic001G199500 Sobic001G199500 Sobic006G281900--Sobic001G199500 Sobic001G425700 Sobic001G425700 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic007G187700 Sobic007G187700 Sobic006G281900--Sobic007G187700 Sobic003G024000 Sobic003G024000 Sobic006G281900--Sobic003G024000 Sobic004G116500 Sobic004G116500 Sobic005G120600--Sobic004G116500 Sobic001G268700 Sobic001G268700 Sobic005G120600--Sobic001G268700 Sobic010G221200 Sobic010G221200 Sobic005G120600--Sobic010G221200 Sobic004G141000 Sobic004G141000 Sobic005G120600--Sobic004G141000 Sobic002G416150 Sobic002G416150 Sobic005G120600--Sobic002G416150 Sobic005G120600--Sobic010G013500 Sobic005G139300 Sobic005G139300 Sobic005G120600--Sobic005G139300 Sobic002G002500 Sobic002G002500 Sobic005G120600--Sobic002G002500 Sobic004G286250 Sobic004G286250 Sobic005G120600--Sobic004G286250
Octagon: transcription factors


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